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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:57.0 nTPM
HPA:57.0 nTPM
GTEx:51.7 nTPM
FANTOM5:60.8 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:12.0 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 57.0
Sample id Sample description nTPM
Amygdala
nTPM: 53.3
1987 Female, age 91, left hemisphere 58.9
2514 Male, age 75, right hemisphere 55.3
2517 Female, age 94, left hemisphere 54.9
2814 Male, age 76, right hemisphere 52.1
2695 Female, age 67, right hemisphere 45.4
Basal amygdala
nTPM: 49.2
2243 Female, age 91, right hemisphere 58.7
2609 Male, age 75, right hemisphere 58.6
1955 Male, age 76, both hemispheres 53.5
2685 Female, age 94, left hemisphere 47.8
2110 Male, age 80, left hemisphere 46.6
2827 Female, age 67, right hemisphere 29.9
Central amygdala
nTPM: 57.0
2515 Male, age 75, right hemisphere 74.2
2701 Female, age 91, right hemisphere 69.2
1905 Male, age 76, both hemispheres 52.2
2239 Male, age 80, left hemisphere 45.8
2826 Female, age 94, left hemisphere 43.5
Corticomedial amygdala
nTPM: 45.8
2428 Male, age 75, right hemisphere 55.2
2240 Male, age 76, both hemispheres 50.8
2429 Female, age 94, left hemisphere 46.0
2242 Female, age 91, right hemisphere 44.3
2829 Male, age 80, left hemisphere 43.7
2535 Female, age 67, right hemisphere 34.9
Lateral amygdala
nTPM: 47.8
2256 Male, age 80, left hemisphere 64.6
2255 Female, age 91, right hemisphere 63.6
2516 Male, age 75, right hemisphere 47.3
1883 Male, age 76, both hemispheres 46.8
2534 Female, age 94, left hemisphere 38.7
2830 Female, age 67, right hemisphere 25.8
Stria terminalis, bed nucleus
nTPM: 51.8
2201 Male, age 74, unknown 59.9
2486 Female, age 94, both hemispheres 54.0
1974 Female, age 91, both hemispheres 41.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 51.7
Samples: 152

Max nTPM: 181.5
Min nTPM: 3.4
Std nTPM: 29.3
Median nTPM: 46.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 181.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 157.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 130.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 118.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 112.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 108.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 106.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 97.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 97.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 95.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 94.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 91.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 91.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 86.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 84.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 83.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 83.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 81.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 80.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 80.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 80.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 80.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 79.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 78.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 77.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 77.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 77.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 75.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 74.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 73.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 73.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 72.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 69.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 69.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 68.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 67.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 67.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 66.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 66.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 65.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 65.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 64.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 64.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 63.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 62.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 62.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 62.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 61.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 61.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 61.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 60.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 60.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 59.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 58.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 57.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 57.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 56.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 53.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 53.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 51.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 51.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 50.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 50.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 50.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 49.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 47.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 46.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 46.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 46.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 46.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 45.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 44.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 44.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 43.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 43.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 43.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 43.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 43.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 42.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 42.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 41.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 38.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 38.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 38.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 38.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 38.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 38.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 38.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 37.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 36.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 36.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 36.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 36.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 36.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 35.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 35.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 33.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 33.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 33.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 32.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 31.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 30.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 29.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 29.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 29.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 28.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 28.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 27.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 27.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 27.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 26.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 26.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 25.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 23.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 23.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 23.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 23.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 23.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 22.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 22.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 22.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 21.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 21.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 21.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 21.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 20.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 20.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 20.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 20.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 20.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 19.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 18.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 18.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 15.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 15.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 15.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 15.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 12.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 12.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 11.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 9.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 9.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 5.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 3.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 60.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 60.8
FF:10151-102I7 76 years, female 60.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.5
Pig sample Sample description nTPM
Amygdala
nTPM: 13.5
Samples: 4

Max nTPM: 20.3
Min nTPM: 10.1
Sample A Female 20.3
Sample B Female 10.1
Sample C Male 11.3
Sample D Male 12.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 12.0
Samples: 4

Max nTPM: 14.0
Min nTPM: 10.2
Sample A Male 12.0
Sample B Male 11.8
Sample C Female 10.2
Sample D Female 14.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
71724468 Antisense, RP_050927_03_F05, Mouse strain C57BL/6J (56 days, male) 0.2

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