MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.2 nTPM
HPA:67.2 nTPM
GTEx:60.9 nTPM
FANTOM5:62.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.7
1827 Male, age 72, unknown 66.1
2586 Male, age 75, left hemisphere 66.0
2019 Male, age 18, unknown 65.1
1870 Female, age 42, unknown 64.8
2666 Male, age 74, left hemisphere 64.4
2219 Male, age 76, both hemispheres 62.8
1833 Male, age 53, unknown 62.4
1830 Male, age 51, unknown 62.3
2411 Female, age 72, unknown 61.8
2828 Female, age 72, unknown 61.0
Dorsal raphe nucleus
nTPM: 65.2
2298 Female, age 72, unknown 68.3
1828 Male, age 53, unknown 65.5
2047 Male, age 72, unknown 64.9
2750 Male, age 76, both hemispheres 64.4
2016 Female, age 72, unknown 62.9
Inferior colliculus
nTPM: 64.8
1848 Female, age 42, unknown 66.0
2097 Female, age 72, unknown 65.0
1890 Male, age 53, unknown 64.6
2849 Male, age 72, unknown 63.5
Median raphe nucleus
nTPM: 64.2
2220 Male, age 76, midline 64.2
Pedunculopontine tegmental nucleus
nTPM: 63.8
2338 Male, age 61, both hemispheres 64.6
2334 Male, age 80, both hemispheres 64.0
1921 Female, age 85, both hemispheres 62.9
Periaquaductal grey, anterior
nTPM: 66.6
1947 Male, age 18, unknown 67.9
2502 Female, age 75, unknown 66.4
1795 Male, age 51, unknown 65.4
Periaquaductal grey, dorsal
nTPM: 62.5
1840 Male, age 53, unknown 64.5
2850 Male, age 76, both hemispheres 63.9
2464 Female, age 72, unknown 61.6
1831 Male, age 72, unknown 60.1
Periaquaductal grey, lateral
nTPM: 63.5
2272 Male, age 74, both hemispheres 66.6
2053 Male, age 18, unknown 62.5
2140 Male, age 76, both hemispheres 61.5
Pretectal area
nTPM: 65.6
1816 Male, age 51, unknown 68.3
1817 Female, age 42, unknown 67.8
2007 Male, age 72, unknown 67.6
2273 Male, age 74, both hemispheres 66.2
1944 Female, age 72, unknown 66.1
2407 Male, age 75, both hemispheres 65.7
1815 Male, age 53, unknown 65.2
2667 Female, age 75, unknown 64.4
2224 Female, age 72, unknown 64.0
2825 Male, age 18, unknown 63.5
2316 Male, age 76, right hemisphere 62.4
Red nucleus
nTPM: 64.9
1821 Female, age 72, unknown 67.9
2725 Female, age 75, unknown 67.9
1865 Male, age 51, unknown 65.8
2584 Male, age 75, left hemisphere 65.4
2588 Male, age 74, left hemisphere 65.1
2503 Female, age 72, unknown 65.0
2227 Male, age 72, unknown 64.9
2769 Male, age 72, unknown 64.3
2785 Male, age 18, unknown 64.0
1954 Female, age 42, unknown 63.2
1904 Male, age 53, unknown 63.0
2823 Male, age 76, right hemisphere 62.2
Substantia nigra
nTPM: 67.2
1916 Female, age 42, unknown 71.4
1889 Female, age 72, unknown 69.7
2241 Male, age 72, unknown 69.2
1941 Male, age 53, unknown 68.1
1851 Male, age 51, unknown 68.0
2699 Male, age 18, unknown 66.2
2665 Male, age 74, both hemispheres 65.9
2583 Male, age 75, right hemisphere 64.6
2590 Female, age 75, unknown 64.6
2409 Female, age 72, unknown 64.3
Superior colliculus
nTPM: 64.5
1796 Male, age 53, unknown 67.2
2261 Male, age 18, unknown 66.5
2664 Male, age 75, both hemispheres 65.3
2668 Female, age 75, unknown 65.2
1895 Male, age 76, right hemisphere 65.0
2087 Female, age 72, unknown 63.6
2587 Male, age 74, left hemisphere 63.6
1839 Male, age 51, unknown 63.4
1995 Male, age 72, unknown 63.1
1913 Female, age 42, unknown 62.1
Ventral tegmental area
nTPM: 64.7
2223 Female, age 72, unknown 68.0
1915 Female, age 42, unknown 67.1
2218 Male, age 76, both hemispheres 64.1
1942 Male, age 51, unknown 63.9
2410 Female, age 72, unknown 62.7
2021 Male, age 53, unknown 62.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.9
Samples: 139

Max nTPM: 108.3
Min nTPM: 39.8
Std nTPM: 11.6
Median nTPM: 58.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 108.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 107.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 98.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 91.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 88.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 80.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 80.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 79.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 79.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 79.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 78.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.