MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:82.9 nTPM
HPA:82.9 nTPM
GTEx:75.0 nTPM
FANTOM5:128.2 Scaled Tags Per Million
Pig:58.8 nTPM
Mouse:148.0 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.4
2828 Female, age 72, unknown 81.5
2586 Male, age 75, left hemisphere 74.1
1870 Female, age 42, unknown 69.4
1830 Male, age 51, unknown 68.2
1833 Male, age 53, unknown 68.1
1827 Male, age 72, unknown 67.2
2219 Male, age 76, both hemispheres 64.8
2666 Male, age 74, left hemisphere 62.2
2411 Female, age 72, unknown 60.1
2019 Male, age 18, unknown 58.9
Dorsal raphe nucleus
nTPM: 73.6
2016 Female, age 72, unknown 83.2
2298 Female, age 72, unknown 72.6
1828 Male, age 53, unknown 72.4
2750 Male, age 76, both hemispheres 70.8
2047 Male, age 72, unknown 68.7
Inferior colliculus
nTPM: 70.4
1848 Female, age 42, unknown 80.2
2849 Male, age 72, unknown 70.4
2097 Female, age 72, unknown 66.8
1890 Male, age 53, unknown 64.2
Median raphe nucleus
nTPM: 82.9
2220 Male, age 76, midline 82.9
Pedunculopontine tegmental nucleus
nTPM: 75.0
2338 Male, age 61, both hemispheres 81.0
2334 Male, age 80, both hemispheres 75.6
1921 Female, age 85, both hemispheres 68.4
Periaquaductal grey, anterior
nTPM: 70.6
1795 Male, age 51, unknown 75.3
1947 Male, age 18, unknown 72.1
2502 Female, age 75, unknown 64.3
Periaquaductal grey, dorsal
nTPM: 71.2
1831 Male, age 72, unknown 79.1
1840 Male, age 53, unknown 75.0
2850 Male, age 76, both hemispheres 68.2
2464 Female, age 72, unknown 62.5
Periaquaductal grey, lateral
nTPM: 82.2
2272 Male, age 74, both hemispheres 97.1
2053 Male, age 18, unknown 80.0
2140 Male, age 76, both hemispheres 69.5
Pretectal area
nTPM: 73.8
2273 Male, age 74, both hemispheres 98.1
2407 Male, age 75, both hemispheres 82.0
2667 Female, age 75, unknown 78.9
2825 Male, age 18, unknown 78.2
2224 Female, age 72, unknown 77.7
1944 Female, age 72, unknown 71.2
1817 Female, age 42, unknown 69.7
1815 Male, age 53, unknown 69.2
2316 Male, age 76, right hemisphere 68.8
1816 Male, age 51, unknown 60.6
2007 Male, age 72, unknown 57.5
Red nucleus
nTPM: 72.4
2725 Female, age 75, unknown 80.9
1954 Female, age 42, unknown 79.4
1865 Male, age 51, unknown 78.6
2227 Male, age 72, unknown 76.9
2823 Male, age 76, right hemisphere 76.7
2769 Male, age 72, unknown 76.5
2503 Female, age 72, unknown 76.0
1904 Male, age 53, unknown 70.6
1821 Female, age 72, unknown 69.9
2785 Male, age 18, unknown 64.3
2584 Male, age 75, left hemisphere 60.3
2588 Male, age 74, left hemisphere 58.7
Substantia nigra
nTPM: 70.3
2699 Male, age 18, unknown 94.5
2583 Male, age 75, right hemisphere 73.7
1889 Female, age 72, unknown 72.9
1851 Male, age 51, unknown 71.9
2590 Female, age 75, unknown 71.3
1916 Female, age 42, unknown 71.0
1941 Male, age 53, unknown 65.9
2241 Male, age 72, unknown 62.0
2665 Male, age 74, both hemispheres 61.3
2409 Female, age 72, unknown 58.7
Superior colliculus
nTPM: 74.0
1995 Male, age 72, unknown 91.0
1796 Male, age 53, unknown 83.9
1913 Female, age 42, unknown 80.5
2587 Male, age 74, left hemisphere 76.3
2664 Male, age 75, both hemispheres 72.6
2087 Female, age 72, unknown 70.1
1839 Male, age 51, unknown 68.9
1895 Male, age 76, right hemisphere 66.4
2261 Male, age 18, unknown 65.8
2668 Female, age 75, unknown 64.2
Ventral tegmental area
nTPM: 72.8
2223 Female, age 72, unknown 77.7
1942 Male, age 51, unknown 75.1
1915 Female, age 42, unknown 74.0
2021 Male, age 53, unknown 72.8
2218 Male, age 76, both hemispheres 70.6
2410 Female, age 72, unknown 66.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.0
Samples: 139

Max nTPM: 184.6
Min nTPM: 19.4
Std nTPM: 29.2
Median nTPM: 73.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 184.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 182.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 142.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 127.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 127.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 126.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 126.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 123.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 120.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 117.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 116.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.2
FF:10158-103A5 76 years, female 128.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.8
Pig sample Sample description nTPM
Midbrain
nTPM: 57.7
Samples: 4

Max nTPM: 94.7
Min nTPM: 22.1
Sample A Female 94.7
Sample B Female 35.9
Sample C Male 78.0
Sample D Male 22.1
Periaqueductal gray
nTPM: 43.7
Samples: 3

Max nTPM: 52.1
Min nTPM: 34.4
Sample B Female 34.4
Sample C Male 52.1
Sample D Male 44.5
Substantia nigra
nTPM: 58.8
Samples: 4

Max nTPM: 72.4
Min nTPM: 53.9
Sample A Female 53.9
Sample B Female 54.7
Sample C Male 54.1
Sample D Male 72.4
Superior colliculi
nTPM: 58.7
Samples: 4

Max nTPM: 84.0
Min nTPM: 46.3
Sample A Female 46.3
Sample B Female 50.0
Sample C Male 84.0
Sample D Male 54.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 148.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 148.0
Samples: 4

Max nTPM: 156.4
Min nTPM: 141.3
Sample A Male 156.4
Sample B Male 141.3
Sample C Female 149.1
Sample D Female 145.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
71836806 Antisense, RP_051017_02_A11, Mouse strain C57BL/6J (56 days, male) 2.4
413825 Antisense, RP_040809_01_G11, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.