MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA:11.0 nTPM
GTEx:10.7 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:19.1 nTPM
Mouse:14.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.9
2411 Female, age 72, unknown 11.1
1870 Female, age 42, unknown 11.0
2019 Male, age 18, unknown 10.5
1827 Male, age 72, unknown 10.3
1833 Male, age 53, unknown 10.2
1830 Male, age 51, unknown 10.1
2828 Female, age 72, unknown 10.1
2666 Male, age 74, left hemisphere 9.6
2219 Male, age 76, both hemispheres 9.2
2586 Male, age 75, left hemisphere 6.9
Dorsal raphe nucleus
nTPM: 9.9
2016 Female, age 72, unknown 10.8
2750 Male, age 76, both hemispheres 10.5
1828 Male, age 53, unknown 10.3
2298 Female, age 72, unknown 9.4
2047 Male, age 72, unknown 8.3
Inferior colliculus
nTPM: 10.1
1848 Female, age 42, unknown 10.4
2097 Female, age 72, unknown 10.2
2849 Male, age 72, unknown 10.2
1890 Male, age 53, unknown 9.7
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Pedunculopontine tegmental nucleus
nTPM: 10.6
2334 Male, age 80, both hemispheres 10.8
2338 Male, age 61, both hemispheres 10.5
1921 Female, age 85, both hemispheres 10.4
Periaquaductal grey, anterior
nTPM: 9.7
1947 Male, age 18, unknown 10.8
2502 Female, age 75, unknown 9.4
1795 Male, age 51, unknown 8.9
Periaquaductal grey, dorsal
nTPM: 10.4
2850 Male, age 76, both hemispheres 11.5
1831 Male, age 72, unknown 10.9
2464 Female, age 72, unknown 9.6
1840 Male, age 53, unknown 9.4
Periaquaductal grey, lateral
nTPM: 9.7
2053 Male, age 18, unknown 10.1
2140 Male, age 76, both hemispheres 10.1
2272 Male, age 74, both hemispheres 8.8
Pretectal area
nTPM: 10.0
2224 Female, age 72, unknown 11.0
1815 Male, age 53, unknown 10.8
1817 Female, age 42, unknown 10.5
2273 Male, age 74, both hemispheres 10.5
1816 Male, age 51, unknown 10.4
2316 Male, age 76, right hemisphere 9.8
2007 Male, age 72, unknown 9.7
2407 Male, age 75, both hemispheres 9.6
2667 Female, age 75, unknown 9.5
2825 Male, age 18, unknown 9.3
1944 Female, age 72, unknown 9.1
Red nucleus
nTPM: 10.7
1821 Female, age 72, unknown 12.7
1954 Female, age 42, unknown 11.9
2503 Female, age 72, unknown 11.1
2725 Female, age 75, unknown 11.0
1904 Male, age 53, unknown 10.8
2823 Male, age 76, right hemisphere 10.8
1865 Male, age 51, unknown 10.6
2588 Male, age 74, left hemisphere 10.4
2227 Male, age 72, unknown 10.0
2769 Male, age 72, unknown 10.0
2785 Male, age 18, unknown 9.5
2584 Male, age 75, left hemisphere 9.0
Substantia nigra
nTPM: 9.8
2590 Female, age 75, unknown 11.0
2241 Male, age 72, unknown 10.3
1889 Female, age 72, unknown 10.0
2409 Female, age 72, unknown 10.0
2699 Male, age 18, unknown 10.0
2665 Male, age 74, both hemispheres 9.9
2583 Male, age 75, right hemisphere 9.6
1851 Male, age 51, unknown 9.5
1941 Male, age 53, unknown 9.2
1916 Female, age 42, unknown 8.6
Superior colliculus
nTPM: 9.7
1995 Male, age 72, unknown 11.3
1913 Female, age 42, unknown 10.9
1839 Male, age 51, unknown 10.7
1895 Male, age 76, right hemisphere 10.7
1796 Male, age 53, unknown 9.4
2587 Male, age 74, left hemisphere 9.3
2087 Female, age 72, unknown 9.1
2261 Male, age 18, unknown 9.0
2668 Female, age 75, unknown 9.0
2664 Male, age 75, both hemispheres 7.6
Ventral tegmental area
nTPM: 9.7
2218 Male, age 76, both hemispheres 10.6
2021 Male, age 53, unknown 10.1
2410 Female, age 72, unknown 9.7
2223 Female, age 72, unknown 9.5
1915 Female, age 42, unknown 9.2
1942 Male, age 51, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.7
Samples: 139

Max nTPM: 18.9
Min nTPM: 6.9
Std nTPM: 2.3
Median nTPM: 10.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 18.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 17.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 17.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 16.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 15.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 15.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 14.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 14.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 14.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.1
Pig sample Sample description nTPM
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.0
Sample A Female 23.4
Sample B Female 17.0
Sample C Male 18.4
Sample D Male 17.6
Periaqueductal gray
nTPM: 15.7
Samples: 3

Max nTPM: 16.0
Min nTPM: 15.4
Sample B Female 15.6
Sample C Male 15.4
Sample D Male 16.0
Substantia nigra
nTPM: 17.0
Samples: 4

Max nTPM: 18.9
Min nTPM: 15.4
Sample A Female 18.9
Sample B Female 16.4
Sample C Male 15.4
Sample D Male 17.1
Superior colliculi
nTPM: 18.5
Samples: 4

Max nTPM: 19.7
Min nTPM: 15.3
Sample A Female 19.7
Sample B Female 15.3
Sample C Male 19.2
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.1
Sample A Male 13.1
Sample B Male 13.5
Sample C Female 16.0
Sample D Female 14.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68157406 Antisense, RP_041116_02_E11, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.