MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77.5 nTPM
HPA:77.5 nTPM
GTEx:57.9 nTPM
FANTOM5:191.5 Scaled Tags Per Million
Pig:60.4 nTPM
Mouse:22.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.1
1833 Male, age 53, unknown 79.8
1830 Male, age 51, unknown 76.4
1870 Female, age 42, unknown 73.1
2828 Female, age 72, unknown 70.9
2411 Female, age 72, unknown 67.0
2019 Male, age 18, unknown 66.4
1827 Male, age 72, unknown 64.0
2666 Male, age 74, left hemisphere 64.0
2219 Male, age 76, both hemispheres 61.5
2586 Male, age 75, left hemisphere 58.0
Dorsal raphe nucleus
nTPM: 67.3
2750 Male, age 76, both hemispheres 72.6
2016 Female, age 72, unknown 71.8
1828 Male, age 53, unknown 68.1
2047 Male, age 72, unknown 64.0
2298 Female, age 72, unknown 60.1
Inferior colliculus
nTPM: 67.7
1848 Female, age 42, unknown 71.6
2849 Male, age 72, unknown 71.1
1890 Male, age 53, unknown 65.1
2097 Female, age 72, unknown 62.9
Median raphe nucleus
nTPM: 70.2
2220 Male, age 76, midline 70.2
Pedunculopontine tegmental nucleus
nTPM: 72.2
2338 Male, age 61, both hemispheres 81.4
2334 Male, age 80, both hemispheres 69.6
1921 Female, age 85, both hemispheres 65.5
Periaquaductal grey, anterior
nTPM: 61.3
1947 Male, age 18, unknown 62.6
1795 Male, age 51, unknown 60.9
2502 Female, age 75, unknown 60.4
Periaquaductal grey, dorsal
nTPM: 71.2
2850 Male, age 76, both hemispheres 83.3
2464 Female, age 72, unknown 69.7
1840 Male, age 53, unknown 66.4
1831 Male, age 72, unknown 65.3
Periaquaductal grey, lateral
nTPM: 71.8
2140 Male, age 76, both hemispheres 78.2
2272 Male, age 74, both hemispheres 69.9
2053 Male, age 18, unknown 67.4
Pretectal area
nTPM: 65.7
2667 Female, age 75, unknown 75.8
2273 Male, age 74, both hemispheres 71.7
2316 Male, age 76, right hemisphere 70.7
2825 Male, age 18, unknown 67.0
1815 Male, age 53, unknown 66.0
2224 Female, age 72, unknown 64.9
1817 Female, age 42, unknown 64.5
2407 Male, age 75, both hemispheres 64.2
1944 Female, age 72, unknown 62.4
1816 Male, age 51, unknown 58.2
2007 Male, age 72, unknown 56.7
Red nucleus
nTPM: 77.5
1954 Female, age 42, unknown 88.6
1821 Female, age 72, unknown 84.9
1904 Male, age 53, unknown 84.6
2823 Male, age 76, right hemisphere 83.2
2769 Male, age 72, unknown 81.3
1865 Male, age 51, unknown 81.0
2227 Male, age 72, unknown 79.9
2503 Female, age 72, unknown 74.8
2785 Male, age 18, unknown 71.9
2725 Female, age 75, unknown 71.1
2588 Male, age 74, left hemisphere 66.5
2584 Male, age 75, left hemisphere 62.0
Substantia nigra
nTPM: 67.6
2699 Male, age 18, unknown 83.2
2241 Male, age 72, unknown 71.6
2409 Female, age 72, unknown 70.7
1851 Male, age 51, unknown 68.5
2590 Female, age 75, unknown 68.5
1889 Female, age 72, unknown 67.3
2583 Male, age 75, right hemisphere 63.7
1916 Female, age 42, unknown 63.4
1941 Male, age 53, unknown 59.9
2665 Male, age 74, both hemispheres 59.6
Superior colliculus
nTPM: 66.2
1995 Male, age 72, unknown 75.1
1913 Female, age 42, unknown 73.5
1895 Male, age 76, right hemisphere 70.3
2587 Male, age 74, left hemisphere 69.4
1839 Male, age 51, unknown 65.8
1796 Male, age 53, unknown 63.1
2087 Female, age 72, unknown 62.5
2664 Male, age 75, both hemispheres 61.7
2668 Female, age 75, unknown 61.5
2261 Male, age 18, unknown 59.4
Ventral tegmental area
nTPM: 66.8
2218 Male, age 76, both hemispheres 70.9
2223 Female, age 72, unknown 70.0
2021 Male, age 53, unknown 66.0
2410 Female, age 72, unknown 65.8
1915 Female, age 42, unknown 65.3
1942 Male, age 51, unknown 63.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.9
Samples: 139

Max nTPM: 105.1
Min nTPM: 17.2
Std nTPM: 14.8
Median nTPM: 56.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 105.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 101.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 97.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 97.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 95.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 86.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 82.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 81.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 79.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 77.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 191.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 191.5
FF:10158-103A5 76 years, female 191.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.4
Pig sample Sample description nTPM
Midbrain
nTPM: 57.0
Samples: 4

Max nTPM: 79.2
Min nTPM: 40.3
Sample A Female 79.2
Sample B Female 64.7
Sample C Male 43.6
Sample D Male 40.3
Periaqueductal gray
nTPM: 58.8
Samples: 3

Max nTPM: 60.6
Min nTPM: 56.6
Sample B Female 59.3
Sample C Male 56.6
Sample D Male 60.6
Substantia nigra
nTPM: 60.4
Samples: 4

Max nTPM: 67.1
Min nTPM: 49.9
Sample A Female 58.7
Sample B Female 67.1
Sample C Male 49.9
Sample D Male 65.8
Superior colliculi
nTPM: 55.2
Samples: 4

Max nTPM: 64.2
Min nTPM: 47.8
Sample A Female 56.0
Sample B Female 64.2
Sample C Male 47.8
Sample D Male 52.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 22.5
Min nTPM: 21.3
Sample A Male 22.3
Sample B Male 21.3
Sample C Female 21.9
Sample D Female 22.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
700 Antisense, RP_Baylor_102927, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.