MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA:53.3 nTPM
GTEx:74.6 nTPM
FANTOM5:107.6 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:73.0 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.3
1870 Female, age 42, unknown 55.2
1830 Male, age 51, unknown 52.9
2411 Female, age 72, unknown 51.7
1833 Male, age 53, unknown 51.4
2019 Male, age 18, unknown 50.7
2666 Male, age 74, left hemisphere 48.7
1827 Male, age 72, unknown 43.8
2219 Male, age 76, both hemispheres 43.5
2586 Male, age 75, left hemisphere 42.5
2828 Female, age 72, unknown 42.2
Dorsal raphe nucleus
nTPM: 46.7
2750 Male, age 76, both hemispheres 51.2
2016 Female, age 72, unknown 48.0
1828 Male, age 53, unknown 46.0
2298 Female, age 72, unknown 45.5
2047 Male, age 72, unknown 42.6
Inferior colliculus
nTPM: 46.9
1890 Male, age 53, unknown 49.1
2097 Female, age 72, unknown 48.9
1848 Female, age 42, unknown 46.2
2849 Male, age 72, unknown 43.5
Median raphe nucleus
nTPM: 44.5
2220 Male, age 76, midline 44.5
Pedunculopontine tegmental nucleus
nTPM: 49.3
2338 Male, age 61, both hemispheres 51.8
2334 Male, age 80, both hemispheres 50.1
1921 Female, age 85, both hemispheres 46.0
Periaquaductal grey, anterior
nTPM: 44.3
2502 Female, age 75, unknown 47.9
1947 Male, age 18, unknown 44.9
1795 Male, age 51, unknown 40.2
Periaquaductal grey, dorsal
nTPM: 44.6
2464 Female, age 72, unknown 46.7
1831 Male, age 72, unknown 45.6
2850 Male, age 76, both hemispheres 44.6
1840 Male, age 53, unknown 41.7
Periaquaductal grey, lateral
nTPM: 42.6
2053 Male, age 18, unknown 43.8
2272 Male, age 74, both hemispheres 42.7
2140 Male, age 76, both hemispheres 41.2
Pretectal area
nTPM: 44.7
1815 Male, age 53, unknown 49.5
2316 Male, age 76, right hemisphere 48.6
1817 Female, age 42, unknown 46.9
2007 Male, age 72, unknown 46.0
1944 Female, age 72, unknown 44.4
2825 Male, age 18, unknown 43.6
2224 Female, age 72, unknown 43.5
2667 Female, age 75, unknown 42.8
2273 Male, age 74, both hemispheres 42.7
2407 Male, age 75, both hemispheres 42.2
1816 Male, age 51, unknown 42.1
Red nucleus
nTPM: 53.3
1821 Female, age 72, unknown 61.9
1904 Male, age 53, unknown 60.2
1865 Male, age 51, unknown 60.1
1954 Female, age 42, unknown 57.1
2503 Female, age 72, unknown 54.9
2823 Male, age 76, right hemisphere 53.7
2227 Male, age 72, unknown 53.2
2769 Male, age 72, unknown 52.9
2785 Male, age 18, unknown 51.1
2725 Female, age 75, unknown 47.9
2588 Male, age 74, left hemisphere 43.6
2584 Male, age 75, left hemisphere 43.2
Substantia nigra
nTPM: 46.8
2241 Male, age 72, unknown 49.8
2409 Female, age 72, unknown 49.3
2665 Male, age 74, both hemispheres 48.1
1851 Male, age 51, unknown 47.9
2590 Female, age 75, unknown 47.6
1889 Female, age 72, unknown 47.4
2699 Male, age 18, unknown 46.9
2583 Male, age 75, right hemisphere 45.7
1916 Female, age 42, unknown 43.3
1941 Male, age 53, unknown 42.4
Superior colliculus
nTPM: 47.4
1913 Female, age 42, unknown 54.4
1995 Male, age 72, unknown 54.0
1895 Male, age 76, right hemisphere 50.7
2668 Female, age 75, unknown 48.5
2587 Male, age 74, left hemisphere 48.1
1839 Male, age 51, unknown 46.2
2261 Male, age 18, unknown 44.2
2087 Female, age 72, unknown 43.7
1796 Male, age 53, unknown 42.8
2664 Male, age 75, both hemispheres 41.3
Ventral tegmental area
nTPM: 46.8
2223 Female, age 72, unknown 51.8
2410 Female, age 72, unknown 49.7
1915 Female, age 42, unknown 46.5
1942 Male, age 51, unknown 44.6
2021 Male, age 53, unknown 44.6
2218 Male, age 76, both hemispheres 43.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.6
Samples: 139

Max nTPM: 161.2
Min nTPM: 36.9
Std nTPM: 22.8
Median nTPM: 67.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 161.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 139.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 136.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 125.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 122.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 118.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 116.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 113.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 112.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 111.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 111.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 107.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.6
FF:10158-103A5 76 years, female 107.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 19.0
Min nTPM: 9.8
Sample A Female 19.0
Sample B Female 14.2
Sample C Male 9.8
Sample D Male 10.4
Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 12.2
Min nTPM: 10.8
Sample B Female 12.2
Sample C Male 10.8
Sample D Male 12.2
Substantia nigra
nTPM: 13.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 12.9
Sample C Male 12.3
Sample D Male 17.2
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 12.8
Min nTPM: 7.7
Sample A Female 9.9
Sample B Female 7.7
Sample C Male 11.6
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 73.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.1
Samples: 4

Max nTPM: 76.8
Min nTPM: 68.7
Sample A Male 76.8
Sample B Male 74.2
Sample C Female 68.7
Sample D Female 72.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75831752 Antisense, RP_060601_02_D01, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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