BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:43.6 nTPM
HPA:43.6 nTPM
GTEx:26.3 nTPM
FANTOM5:109.3 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB045963
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.6
2481 Female, age 94, left hemisphere 46.5
2288 Male, age 75, left hemisphere 42.2
2846 Female, age 79, unknown 41.2
1854 Male, age 80, left hemisphere 40.1
1857 Female, age 85, left hemisphere 39.9
2290 Female, age 72, unknown 38.8
1781 Male, age 74, unknown 38.2
2289 Male, age 61, right hemisphere 38.2
Claustrum
nTPM: 38.7
2392 Female, age 94, both hemispheres 42.9
1956 Male, age 74, unknown 42.3
2196 Female, age 79, unknown 40.5
2292 Female, age 85, both hemispheres 39.2
2198 Male, age 80, both hemispheres 38.6
2491 Male, age 75, both hemispheres 37.0
2284 Female, age 91, both hemispheres 36.7
2645 Female, age 72, unknown 36.2
2568 Male, age 61, both hemispheres 35.3
Globus pallidus, externus
nTPM: 42.7
2395 Male, age 75, both hemispheres 49.2
2772 Female, age 79, unknown 48.2
1996 Male, age 80, right hemisphere 46.6
2567 Female, age 72, unknown 34.8
2646 Male, age 61, right hemisphere 34.8
Globus pallidus, internus
nTPM: 43.6
2778 Female, age 91, both hemispheres 47.0
1818 Male, age 74, unknown 45.7
2287 Male, age 75, right hemisphere 44.7
2037 Male, age 80, right hemisphere 44.6
2111 Female, age 85, right hemisphere 44.3
2483 Female, age 94, right hemisphere 41.8
2566 Female, age 72, unknown 37.3
Nucleus accumbens
nTPM: 40.3
2391 Female, age 94, left hemisphere 45.6
2286 Male, age 75, left hemisphere 42.2
2698 Female, age 72, unknown 41.5
1856 Female, age 91, right hemisphere 40.1
2824 Male, age 61, right hemisphere 39.5
2732 Male, age 80, right hemisphere 38.9
1806 Female, age 85, left hemisphere 38.7
1783 Male, age 74, unknown 36.3
Nucleus basalis of Meynert
nTPM: 39.2
2821 Male, age 75, both hemispheres 42.3
2393 Male, age 80, right hemisphere 41.3
2484 Female, age 94, left hemisphere 38.9
2569 Male, age 61, both hemispheres 34.4
Nucleus of the diagonal band
nTPM: 41.1
1812 Female, age 91, both hemispheres 45.0
2775 Male, age 80, right hemisphere 42.2
2029 Male, age 61, right hemisphere 40.2
2195 Female, age 85, both hemispheres 39.2
1979 Male, age 74, unknown 38.8
Olfactory tubercle
nTPM: 40.0
1846 Male, age 80, right hemisphere 42.2
2856 Male, age 75, right hemisphere 40.2
2487 Female, age 94, left hemisphere 39.3
1998 Female, age 91, both hemispheres 38.3
Putamen
nTPM: 38.6
2482 Female, age 94, left hemisphere 45.4
1937 Female, age 91, right hemisphere 41.1
2466 Female, age 79, unknown 38.3
1838 Male, age 80, right hemisphere 37.9
1829 Male, age 74, unknown 37.8
2489 Female, age 72, unknown 35.5
2647 Male, age 75, left hemisphere 34.2
Septal nuclei
nTPM: 40.6
2394 Male, age 61, left hemisphere 42.2
2031 Female, age 72, unknown 42.0
2629 Female, age 94, right hemisphere 41.8
2009 Female, age 91, both hemispheres 41.2
2199 Male, age 80, right hemisphere 40.5
1960 Male, age 74, unknown 40.2
2059 Female, age 85, both hemispheres 36.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.3
Samples: 246

Max nTPM: 49.6
Min nTPM: 16.8
Std nTPM: 4.9
Median nTPM: 25.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 49.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 42.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 41.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 40.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 39.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 38.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 37.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 36.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 36.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 35.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.1
Samples: 246

Max nTPM: 47.9
Min nTPM: 15.2
Std nTPM: 4.7
Median nTPM: 24.4
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 47.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 40.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 39.0
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 38.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 37.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 37.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 35.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 35.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 35.2
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 34.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 34.8
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Brain - Putamen (basal ganglia)
Average nTPM: 25.7
Samples: 205

Max nTPM: 39.0
Min nTPM: 16.2
Std nTPM: 4.3
Median nTPM: 25.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 39.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 37.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 37.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 36.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 36.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 35.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 35.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 35.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 34.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 34.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 34.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 102.2
FF:10164-103B2 76 years, female 102.2
Globus pallidus
Scaled Tags Per Million: 109.3
FF:10161-103A8 76 years, female 119.2
FF:10175-103C4 60 years, female 99.4
Nucleus accumbens
Scaled Tags Per Million: 99.7
FF:10037-101F1 23-56 years, mixed 99.7
Putamen
Scaled Tags Per Million: 93.6
FF:10176-103C5 60 years, female 93.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Caudate
nTPM: 29.9
Samples: 4

Max nTPM: 33.8
Min nTPM: 27.6
Sample A Female 33.8
Sample B Female 27.6
Sample C Male 30.2
Sample D Male 28.1
Putamen
nTPM: 39.4
Samples: 4

Max nTPM: 46.9
Min nTPM: 31.2
Sample A Female 46.9
Sample B Female 31.2
Sample C Male 44.6
Sample D Male 35.0
Septum
nTPM: 47.2
Samples: 4

Max nTPM: 65.5
Min nTPM: 35.8
Sample A Female 45.3
Sample B Female 35.8
Sample C Male 65.5
Sample D Male 42.0
Ventral pallidum
nTPM: 35.6
Samples: 4

Max nTPM: 43.6
Min nTPM: 31.7
Sample A Female 31.7
Sample B Female 34.8
Sample C Male 43.6
Sample D Male 32.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71892041 Antisense, RP_051012_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71892041 Antisense, RP_051012_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0

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