MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.6 nTPM
HPA:53.6 nTPM
GTEx:46.6 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:22.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
2586 Male, age 75, left hemisphere 64.9
2666 Male, age 74, left hemisphere 57.2
2828 Female, age 72, unknown 55.9
1827 Male, age 72, unknown 51.9
1870 Female, age 42, unknown 50.5
2411 Female, age 72, unknown 50.3
2219 Male, age 76, both hemispheres 50.1
1833 Male, age 53, unknown 50.0
2019 Male, age 18, unknown 49.5
1830 Male, age 51, unknown 49.0
Dorsal raphe nucleus
nTPM: 50.8
2750 Male, age 76, both hemispheres 54.2
2298 Female, age 72, unknown 50.8
1828 Male, age 53, unknown 50.6
2047 Male, age 72, unknown 50.1
2016 Female, age 72, unknown 48.2
Inferior colliculus
nTPM: 47.3
1890 Male, age 53, unknown 47.9
2849 Male, age 72, unknown 47.8
1848 Female, age 42, unknown 47.2
2097 Female, age 72, unknown 46.1
Median raphe nucleus
nTPM: 50.9
2220 Male, age 76, midline 50.9
Pedunculopontine tegmental nucleus
nTPM: 49.4
2334 Male, age 80, both hemispheres 51.8
1921 Female, age 85, both hemispheres 49.4
2338 Male, age 61, both hemispheres 46.9
Periaquaductal grey, anterior
nTPM: 53.6
1795 Male, age 51, unknown 55.3
2502 Female, age 75, unknown 53.3
1947 Male, age 18, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 47.3
1840 Male, age 53, unknown 49.1
2464 Female, age 72, unknown 48.4
1831 Male, age 72, unknown 46.8
2850 Male, age 76, both hemispheres 44.8
Periaquaductal grey, lateral
nTPM: 46.2
2053 Male, age 18, unknown 48.9
2272 Male, age 74, both hemispheres 44.9
2140 Male, age 76, both hemispheres 44.8
Pretectal area
nTPM: 51.5
1816 Male, age 51, unknown 56.7
1817 Female, age 42, unknown 55.5
1815 Male, age 53, unknown 55.3
2007 Male, age 72, unknown 54.8
1944 Female, age 72, unknown 53.3
2407 Male, age 75, both hemispheres 52.3
2825 Male, age 18, unknown 50.9
2667 Female, age 75, unknown 49.1
2224 Female, age 72, unknown 47.4
2316 Male, age 76, right hemisphere 45.8
2273 Male, age 74, both hemispheres 44.9
Red nucleus
nTPM: 50.0
2584 Male, age 75, left hemisphere 55.6
2588 Male, age 74, left hemisphere 53.3
2785 Male, age 18, unknown 51.1
2769 Male, age 72, unknown 51.0
2503 Female, age 72, unknown 50.2
2227 Male, age 72, unknown 49.9
1954 Female, age 42, unknown 49.0
1904 Male, age 53, unknown 48.9
2823 Male, age 76, right hemisphere 48.7
1865 Male, age 51, unknown 48.2
2725 Female, age 75, unknown 47.3
1821 Female, age 72, unknown 46.7
Substantia nigra
nTPM: 53.1
2665 Male, age 74, both hemispheres 60.6
1851 Male, age 51, unknown 56.4
1916 Female, age 42, unknown 55.9
2583 Male, age 75, right hemisphere 55.7
2590 Female, age 75, unknown 52.4
2241 Male, age 72, unknown 52.0
1889 Female, age 72, unknown 51.4
2699 Male, age 18, unknown 51.2
1941 Male, age 53, unknown 49.1
2409 Female, age 72, unknown 46.8
Superior colliculus
nTPM: 52.1
2664 Male, age 75, both hemispheres 60.7
2668 Female, age 75, unknown 58.2
2087 Female, age 72, unknown 54.9
2261 Male, age 18, unknown 53.2
1796 Male, age 53, unknown 52.3
2587 Male, age 74, left hemisphere 49.2
1995 Male, age 72, unknown 49.0
1913 Female, age 42, unknown 48.8
1839 Male, age 51, unknown 48.4
1895 Male, age 76, right hemisphere 46.7
Ventral tegmental area
nTPM: 51.7
2223 Female, age 72, unknown 52.4
1915 Female, age 42, unknown 52.2
2410 Female, age 72, unknown 52.1
2021 Male, age 53, unknown 51.7
1942 Male, age 51, unknown 51.2
2218 Male, age 76, both hemispheres 50.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.6
Samples: 139

Max nTPM: 79.8
Min nTPM: 18.6
Std nTPM: 10.7
Median nTPM: 45.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 79.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 74.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 68.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 66.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 66.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 65.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 64.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 64.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 64.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 35.3
Min nTPM: 20.6
Sample A Female 35.3
Sample B Female 22.9
Sample C Male 34.9
Sample D Male 20.6
Periaqueductal gray
nTPM: 19.9
Samples: 3

Max nTPM: 23.3
Min nTPM: 17.2
Sample B Female 19.1
Sample C Male 23.3
Sample D Male 17.2
Substantia nigra
nTPM: 26.3
Samples: 4

Max nTPM: 28.5
Min nTPM: 23.7
Sample A Female 26.5
Sample B Female 23.7
Sample C Male 28.5
Sample D Male 26.6
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.4
Sample A Female 22.6
Sample B Female 21.4
Sample C Male 26.3
Sample D Male 25.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 25.3
Min nTPM: 21.2
Sample A Male 22.1
Sample B Male 21.3
Sample C Female 21.2
Sample D Female 25.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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