BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:0.8 nTPM
HPA:0.8 nTPM
GTEx:0.8 nTPM
FANTOM5:0.6 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:1.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA034776
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
1781 Male, age 74, unknown 0.6
2481 Female, age 94, left hemisphere 0.5
2288 Male, age 75, left hemisphere 0.4
2289 Male, age 61, right hemisphere 0.3
2290 Female, age 72, unknown 0.2
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.2
2284 Female, age 91, both hemispheres 0.5
2491 Male, age 75, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
2568 Male, age 61, both hemispheres 0.2
1956 Male, age 74, unknown 0.1
2196 Female, age 79, unknown 0.1
2198 Male, age 80, both hemispheres 0.1
2392 Female, age 94, both hemispheres 0.1
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.3
2772 Female, age 79, unknown 0.7
2567 Female, age 72, unknown 0.5
1996 Male, age 80, right hemisphere 0.3
2646 Male, age 61, right hemisphere 0.2
2395 Male, age 75, both hemispheres 0.0
Globus pallidus, internus
nTPM: 0.3
2566 Female, age 72, unknown 0.7
1818 Male, age 74, unknown 0.5
2037 Male, age 80, right hemisphere 0.4
2111 Female, age 85, right hemisphere 0.3
2483 Female, age 94, right hemisphere 0.2
2287 Male, age 75, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.3
1856 Female, age 91, right hemisphere 0.6
1783 Male, age 74, unknown 0.4
1806 Female, age 85, left hemisphere 0.4
2391 Female, age 94, left hemisphere 0.3
2698 Female, age 72, unknown 0.3
2732 Male, age 80, right hemisphere 0.3
2824 Male, age 61, right hemisphere 0.3
2286 Male, age 75, left hemisphere 0.2
Nucleus basalis of Meynert
nTPM: 0.2
2484 Female, age 94, left hemisphere 0.4
2821 Male, age 75, both hemispheres 0.3
2393 Male, age 80, right hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.6
1979 Male, age 74, unknown 0.8
2195 Female, age 85, both hemispheres 0.7
1812 Female, age 91, both hemispheres 0.6
2775 Male, age 80, right hemisphere 0.6
2029 Male, age 61, right hemisphere 0.3
Olfactory tubercle
nTPM: 0.8
2487 Female, age 94, left hemisphere 1.3
1998 Female, age 91, both hemispheres 0.8
1846 Male, age 80, right hemisphere 0.6
2856 Male, age 75, right hemisphere 0.6
Putamen
nTPM: 0.0
1937 Female, age 91, right hemisphere 0.3
2482 Female, age 94, left hemisphere 0.2
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 0.7
2059 Female, age 85, both hemispheres 1.1
1960 Male, age 74, unknown 0.8
2394 Male, age 61, left hemisphere 0.8
2031 Female, age 72, unknown 0.7
2009 Female, age 91, both hemispheres 0.6
2629 Female, age 94, right hemisphere 0.6
2199 Male, age 80, right hemisphere 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 1.9
Min nTPM: 0.2
Std nTPM: 0.2
Median nTPM: 0.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.8
Samples: 246

Max nTPM: 2.1
Min nTPM: 0.0
Std nTPM: 0.3
Median nTPM: 0.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 2.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 2.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 1.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 1.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 1.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 1.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 1.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 1.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 1.4
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 1.4
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 1.4
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Brain - Putamen (basal ganglia)
Average nTPM: 0.6
Samples: 205

Max nTPM: 1.9
Min nTPM: 0.1
Std nTPM: 0.2
Median nTPM: 0.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 1.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 1.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 1.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 1.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.6
FF:10164-103B2 76 years, female 0.6
Globus pallidus
Scaled Tags Per Million: 0.1
FF:10161-103A8 76 years, female 0.3
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.1
FF:10037-101F1 23-56 years, mixed 0.1
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.4
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.8
Sample A Female 1.0
Sample B Female 1.1
Sample C Male 0.8
Sample D Male 1.0
Putamen
nTPM: 1.2
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.8
Sample A Female 2.0
Sample B Female 0.9
Sample C Male 0.8
Sample D Male 1.1
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.1
Sample A Female 1.3
Sample B Female 1.1
Sample C Male 2.2
Sample D Male 1.3
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.9
Sample A Female 1.0
Sample B Female 0.9
Sample C Male 2.1
Sample D Male 1.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.9
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.7
Sample A Male 0.8
Sample B Male 0.7
Sample C Female 1.0
Sample D Female 1.0
Septum
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.9
Sample A Male 1.2
Sample B Male 1.0
Sample C Female 0.9
Sample D Female 1.3
Ventral forebrain
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.7
Sample A Male 0.7
Sample B Male 0.8
Sample C Female 0.7
Sample D Female 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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