MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.9 nTPM
HPA:39.9 nTPM
GTEx:38.4 nTPM
FANTOM5:201.6 Scaled Tags Per Million
Pig:73.7 nTPM
Mouse:163.6 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.8
2019 Male, age 18, unknown 42.0
1870 Female, age 42, unknown 40.9
2411 Female, age 72, unknown 39.8
2586 Male, age 75, left hemisphere 39.2
1833 Male, age 53, unknown 37.8
2666 Male, age 74, left hemisphere 37.4
1830 Male, age 51, unknown 37.2
1827 Male, age 72, unknown 36.3
2828 Female, age 72, unknown 34.2
2219 Male, age 76, both hemispheres 33.0
Dorsal raphe nucleus
nTPM: 35.6
2750 Male, age 76, both hemispheres 39.1
1828 Male, age 53, unknown 37.3
2016 Female, age 72, unknown 34.0
2047 Male, age 72, unknown 33.9
2298 Female, age 72, unknown 33.7
Inferior colliculus
nTPM: 35.7
2097 Female, age 72, unknown 37.3
1848 Female, age 42, unknown 35.7
1890 Male, age 53, unknown 35.4
2849 Male, age 72, unknown 34.4
Median raphe nucleus
nTPM: 35.5
2220 Male, age 76, midline 35.5
Pedunculopontine tegmental nucleus
nTPM: 35.8
2334 Male, age 80, both hemispheres 38.3
1921 Female, age 85, both hemispheres 35.7
2338 Male, age 61, both hemispheres 33.5
Periaquaductal grey, anterior
nTPM: 36.4
2502 Female, age 75, unknown 38.3
1947 Male, age 18, unknown 36.5
1795 Male, age 51, unknown 34.5
Periaquaductal grey, dorsal
nTPM: 34.4
2464 Female, age 72, unknown 35.7
1840 Male, age 53, unknown 34.4
2850 Male, age 76, both hemispheres 34.3
1831 Male, age 72, unknown 33.3
Periaquaductal grey, lateral
nTPM: 33.0
2053 Male, age 18, unknown 34.8
2272 Male, age 74, both hemispheres 32.2
2140 Male, age 76, both hemispheres 31.8
Pretectal area
nTPM: 37.5
1944 Female, age 72, unknown 41.7
1817 Female, age 42, unknown 40.0
1815 Male, age 53, unknown 39.5
1816 Male, age 51, unknown 39.5
2007 Male, age 72, unknown 39.4
2667 Female, age 75, unknown 37.9
2224 Female, age 72, unknown 35.2
2407 Male, age 75, both hemispheres 35.1
2825 Male, age 18, unknown 34.8
2316 Male, age 76, right hemisphere 34.6
2273 Male, age 74, both hemispheres 34.3
Red nucleus
nTPM: 38.8
1821 Female, age 72, unknown 44.8
1954 Female, age 42, unknown 40.7
1865 Male, age 51, unknown 40.3
1904 Male, age 53, unknown 39.4
2785 Male, age 18, unknown 38.3
2725 Female, age 75, unknown 38.2
2769 Male, age 72, unknown 38.0
2503 Female, age 72, unknown 37.8
2823 Male, age 76, right hemisphere 37.6
2227 Male, age 72, unknown 37.2
2584 Male, age 75, left hemisphere 37.2
2588 Male, age 74, left hemisphere 36.7
Substantia nigra
nTPM: 39.9
2241 Male, age 72, unknown 49.3
1889 Female, age 72, unknown 41.0
2583 Male, age 75, right hemisphere 40.9
1916 Female, age 42, unknown 40.5
1941 Male, age 53, unknown 40.5
1851 Male, age 51, unknown 40.3
2409 Female, age 72, unknown 39.2
2590 Female, age 75, unknown 36.8
2699 Male, age 18, unknown 36.4
2665 Male, age 74, both hemispheres 34.5
Superior colliculus
nTPM: 37.1
1913 Female, age 42, unknown 39.0
2668 Female, age 75, unknown 37.9
2664 Male, age 75, both hemispheres 37.6
1839 Male, age 51, unknown 37.4
2087 Female, age 72, unknown 37.2
2587 Male, age 74, left hemisphere 37.1
1895 Male, age 76, right hemisphere 36.9
2261 Male, age 18, unknown 36.9
1995 Male, age 72, unknown 35.7
1796 Male, age 53, unknown 35.2
Ventral tegmental area
nTPM: 37.0
2410 Female, age 72, unknown 39.9
2223 Female, age 72, unknown 39.4
2218 Male, age 76, both hemispheres 36.9
1915 Female, age 42, unknown 36.7
1942 Male, age 51, unknown 35.2
2021 Male, age 53, unknown 34.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.4
Samples: 139

Max nTPM: 57.4
Min nTPM: 25.9
Std nTPM: 6.3
Median nTPM: 37.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 57.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 56.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 54.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 53.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 52.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 51.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 51.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 51.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 50.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 201.6
FF:10158-103A5 76 years, female 201.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.7
Pig sample Sample description nTPM
Midbrain
nTPM: 73.7
Samples: 4

Max nTPM: 89.8
Min nTPM: 63.4
Sample A Female 89.8
Sample B Female 66.6
Sample C Male 75.0
Sample D Male 63.4
Periaqueductal gray
nTPM: 57.8
Samples: 3

Max nTPM: 62.6
Min nTPM: 52.2
Sample B Female 62.6
Sample C Male 58.5
Sample D Male 52.2
Substantia nigra
nTPM: 65.2
Samples: 4

Max nTPM: 80.9
Min nTPM: 55.7
Sample A Female 80.9
Sample B Female 55.7
Sample C Male 61.8
Sample D Male 62.5
Superior colliculi
nTPM: 72.4
Samples: 4

Max nTPM: 83.4
Min nTPM: 58.1
Sample A Female 80.8
Sample B Female 58.1
Sample C Male 83.4
Sample D Male 67.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 163.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.6
Samples: 4

Max nTPM: 173.9
Min nTPM: 154.4
Sample A Male 154.4
Sample B Male 164.1
Sample C Female 173.9
Sample D Female 161.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
70539158 Antisense, RP_050324_01_A10, Mouse strain C57BL/6J (56 days, male) 20.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.