HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:98.8 nTPM
HPA:98.8 nTPM
GTEx:94.1 nTPM
FANTOM5:103.6 Scaled Tags Per Million
Pig:66.6 nTPM
Mouse:142.6 nTPM
Allen mouse:10.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 98.8
Sample id Sample description nTPM
Hippocampus
nTPM: 86.6
2621 Female, age 67, right hemisphere 101.5
2148 Female, age 91, left hemisphere 101.3
1898 Male, age 80, left hemisphere 96.9
1855 Male, age 76, left hemisphere 85.9
1911 Female, age 85, right hemisphere 69.1
2529 Female, age 94, left hemisphere 64.7
Dentate gyrus
nTPM: 97.4
2531 Female, age 67, both hemispheres 125.7
1927 Female, age 91, both hemispheres 110.0
2246 Female, age 85, both hemispheres 91.1
2528 Male, age 74, both hemispheres 88.2
2010 Male, age 76, both hemispheres 87.2
2530 Female, age 94, left hemisphere 82.5
Entorhinal gyrus
nTPM: 53.3
2686 Male, age 75, right hemisphere 56.6
2764 Male, age 80, right hemisphere 55.3
1787 Male, age 76, left hemisphere 53.9
2117 Female, age 91, right hemisphere 51.6
2613 Female, age 94, left hemisphere 51.4
1938 Female, age 85, left hemisphere 50.9
Hippocampus, CA1
nTPM: 90.8
1873 Female, age 85, both hemispheres 99.8
2749 Male, age 80, left hemisphere 95.5
2045 Male, age 76, both hemispheres 95.0
2527 Male, age 74, both hemispheres 84.8
2082 Female, age 91, right hemisphere 78.9
Hippocampus, CA2
nTPM: 75.9
1963 Male, age 80, left hemisphere 111.2
1892 Male, age 76, both hemispheres 81.5
2113 Female, age 91, right hemisphere 74.2
2249 Male, age 74, both hemispheres 67.8
2437 Female, age 94, left hemisphere 60.7
1940 Female, age 85, left hemisphere 59.8
Hippocampus, CA3
nTPM: 98.8
2620 Female, age 94, left hemisphere 176.6
2861 Female, age 67, both hemispheres 120.4
2137 Male, age 80, left hemisphere 86.5
2436 Male, age 74, both hemispheres 71.3
1891 Female, age 85, both hemispheres 69.5
1867 Male, age 76, both hemispheres 68.8
Parahippocampal cortex
nTPM: 61.9
2693 Female, age 94, both hemispheres 76.6
2245 Female, age 91, both hemispheres 72.5
2250 Female, age 67, right hemisphere 67.3
2622 Female, age 67, right hemisphere 65.8
1850 Male, age 80, both hemispheres 61.4
2018 Male, age 76, both hemispheres 59.9
1933 Female, age 85, both hemispheres 56.4
2532 Female, age 72, left hemisphere 53.6
2692 Male, age 74, both hemispheres 53.6
1990 Female, age 91, right hemisphere 52.0
Perirhinal gyrus
nTPM: 67.4
2521 Female, age 94, right hemisphere 80.7
1794 Male, age 80, right hemisphere 72.0
1841 Female, age 85, right hemisphere 64.9
1847 Female, age 91, left hemisphere 60.7
2848 Male, age 76, right hemisphere 58.8
Subiculum
nTPM: 58.8
2729 Female, age 91, right hemisphere 81.8
1901 Male, age 80, both hemispheres 60.1
1977 Female, age 85, both hemispheres 55.3
2619 Male, age 74, both hemispheres 54.5
2042 Male, age 76, both hemispheres 54.3
2438 Female, age 94, left hemisphere 46.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 94.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 94.1
Samples: 197

Max nTPM: 418.0
Min nTPM: 7.6
Std nTPM: 70.1
Median nTPM: 72.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 418.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 306.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 304.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 261.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 256.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 254.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 253.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 243.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 239.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 239.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 224.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 103.6
FF:10169-103B7 60 years, female 144.3
FF:10153-102I9 76 years, female 62.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 66.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 56.5
Samples: 4

Max nTPM: 69.7
Min nTPM: 23.5
Sample A Female 69.7
Sample B Female 66.9
Sample C Male 23.5
Sample D Male 65.8
Entorhinal cortex
nTPM: 32.7
Samples: 4

Max nTPM: 39.2
Min nTPM: 26.7
Sample A Female 36.0
Sample B Female 39.2
Sample C Male 28.9
Sample D Male 26.7
Subiculum
nTPM: 24.9
Samples: 4

Max nTPM: 28.8
Min nTPM: 22.3
Sample A Female 28.8
Sample B Female 23.6
Sample C Male 24.9
Sample D Male 22.3
Ventral hippocampus
nTPM: 66.6
Samples: 4

Max nTPM: 98.2
Min nTPM: 36.5
Sample A Female 98.2
Sample B Female 43.0
Sample C Male 88.7
Sample D Male 36.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 142.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 73.5
Samples: 4

Max nTPM: 84.1
Min nTPM: 64.8
Sample A Male 76.9
Sample B Male 68.1
Sample C Female 84.1
Sample D Female 64.8
Hippocampal formation
nTPM: 142.6
Samples: 4

Max nTPM: 162.0
Min nTPM: 129.2
Sample A Male 130.1
Sample B Male 149.1
Sample C Female 162.0
Sample D Female 129.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.8
81659533 Antisense, RP_090514_05_F08, Mouse strain C57BL/6J (56 days, male) 10.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.