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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:110.5 nTPM
HPA:110.5 nTPM
GTEx:97.0 nTPM
FANTOM5:61.6 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:169.8 nTPM
Allen mouse:7.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 110.5
Sample id Sample description nTPM
Amygdala
nTPM: 110.5
2695 Female, age 67, right hemisphere 115.2
2514 Male, age 75, right hemisphere 110.7
2517 Female, age 94, left hemisphere 109.3
2814 Male, age 76, right hemisphere 109.2
1987 Female, age 91, left hemisphere 108.1
Basal amygdala
nTPM: 105.5
2609 Male, age 75, right hemisphere 108.7
2827 Female, age 67, right hemisphere 108.6
2110 Male, age 80, left hemisphere 108.3
2685 Female, age 94, left hemisphere 103.1
2243 Female, age 91, right hemisphere 102.6
1955 Male, age 76, both hemispheres 101.8
Central amygdala
nTPM: 106.1
2826 Female, age 94, left hemisphere 109.8
2515 Male, age 75, right hemisphere 109.0
1905 Male, age 76, both hemispheres 106.3
2239 Male, age 80, left hemisphere 105.3
2701 Female, age 91, right hemisphere 100.2
Corticomedial amygdala
nTPM: 105.1
2829 Male, age 80, left hemisphere 112.2
2428 Male, age 75, right hemisphere 111.9
2429 Female, age 94, left hemisphere 102.8
2242 Female, age 91, right hemisphere 102.5
2240 Male, age 76, both hemispheres 102.3
2535 Female, age 67, right hemisphere 98.8
Lateral amygdala
nTPM: 107.5
2830 Female, age 67, right hemisphere 115.3
2516 Male, age 75, right hemisphere 114.3
1883 Male, age 76, both hemispheres 110.4
2534 Female, age 94, left hemisphere 105.2
2256 Male, age 80, left hemisphere 101.6
2255 Female, age 91, right hemisphere 98.4
Stria terminalis, bed nucleus
nTPM: 109.9
1974 Female, age 91, both hemispheres 120.5
2201 Male, age 74, unknown 106.8
2486 Female, age 94, both hemispheres 102.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 97.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 97.0
Samples: 152

Max nTPM: 326.1
Min nTPM: 56.5
Std nTPM: 36.7
Median nTPM: 89.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 326.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 294.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 277.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 201.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 181.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 157.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 153.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 152.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 152.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 149.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 148.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 142.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 133.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 132.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 131.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 121.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 118.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 117.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 115.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 114.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 113.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 113.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 112.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 109.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 108.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 107.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 107.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 106.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 106.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 105.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 105.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 104.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 103.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 103.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 102.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 102.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 102.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 101.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 100.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 99.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 99.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 99.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 99.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 98.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 98.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 97.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 97.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 96.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 96.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 96.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 96.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 95.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 94.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 93.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 93.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 93.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 92.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 91.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 90.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 90.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 90.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 90.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 89.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 89.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 89.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 89.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 89.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 89.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 89.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 88.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 87.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 86.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 86.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 86.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 86.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 86.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 86.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 85.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 84.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 84.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 83.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 83.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 83.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 83.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 83.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 82.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 82.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 82.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 82.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 81.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 81.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 80.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 80.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 80.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 79.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 79.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 79.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 79.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 78.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 78.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 78.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 78.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 77.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 77.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 77.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 77.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 77.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 77.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 76.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 76.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 76.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 75.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 75.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 75.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 75.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 75.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 74.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 74.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 74.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 73.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 73.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 73.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 73.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 72.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 72.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 70.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 70.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 70.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 68.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 68.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 68.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 66.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 65.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 61.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 58.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 57.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 56.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 56.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 61.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 61.6
FF:10151-102I7 76 years, female 61.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.2
Pig sample Sample description nTPM
Amygdala
nTPM: 40.2
Samples: 4

Max nTPM: 57.5
Min nTPM: 31.6
Sample A Female 57.5
Sample B Female 34.8
Sample C Male 31.6
Sample D Male 37.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 169.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 169.8
Samples: 4

Max nTPM: 175.7
Min nTPM: 159.6
Sample A Male 172.8
Sample B Male 175.7
Sample C Female 159.6
Sample D Female 171.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.7
68191552 Antisense, RP_041129_01_D07, Mouse strain C57BL/6J (56 days, male) 7.7

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