BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.3 nTPM
HPA:16.3 nTPM
GTEx:13.4 nTPM
FANTOM5:28.7 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:14.9 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA008519
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.6
2288 Male, age 75, left hemisphere 17.1
2481 Female, age 94, left hemisphere 16.5
2290 Female, age 72, unknown 15.8
2289 Male, age 61, right hemisphere 15.4
2846 Female, age 79, unknown 15.4
1781 Male, age 74, unknown 15.1
1857 Female, age 85, left hemisphere 14.7
1854 Male, age 80, left hemisphere 14.5
Claustrum
nTPM: 14.7
1956 Male, age 74, unknown 15.4
2645 Female, age 72, unknown 15.3
2292 Female, age 85, both hemispheres 15.2
2392 Female, age 94, both hemispheres 14.8
2196 Female, age 79, unknown 14.7
2491 Male, age 75, both hemispheres 14.4
2198 Male, age 80, both hemispheres 14.3
2284 Female, age 91, both hemispheres 14.3
2568 Male, age 61, both hemispheres 14.2
Globus pallidus, externus
nTPM: 15.7
1996 Male, age 80, right hemisphere 17.5
2772 Female, age 79, unknown 16.4
2395 Male, age 75, both hemispheres 15.4
2567 Female, age 72, unknown 14.8
2646 Male, age 61, right hemisphere 14.2
Globus pallidus, internus
nTPM: 16.3
1818 Male, age 74, unknown 17.5
2037 Male, age 80, right hemisphere 17.4
2778 Female, age 91, both hemispheres 16.8
2111 Female, age 85, right hemisphere 16.2
2287 Male, age 75, right hemisphere 16.2
2566 Female, age 72, unknown 15.5
2483 Female, age 94, right hemisphere 14.8
Nucleus accumbens
nTPM: 15.0
2286 Male, age 75, left hemisphere 16.1
2391 Female, age 94, left hemisphere 16.1
2698 Female, age 72, unknown 15.5
1806 Female, age 85, left hemisphere 14.8
2732 Male, age 80, right hemisphere 14.8
1783 Male, age 74, unknown 14.4
1856 Female, age 91, right hemisphere 14.4
2824 Male, age 61, right hemisphere 14.0
Nucleus basalis of Meynert
nTPM: 14.8
2821 Male, age 75, both hemispheres 15.2
2393 Male, age 80, right hemisphere 14.9
2484 Female, age 94, left hemisphere 14.5
2569 Male, age 61, both hemispheres 14.5
Nucleus of the diagonal band
nTPM: 14.5
2195 Female, age 85, both hemispheres 14.9
1812 Female, age 91, both hemispheres 14.7
1979 Male, age 74, unknown 14.7
2029 Male, age 61, right hemisphere 14.2
2775 Male, age 80, right hemisphere 13.9
Olfactory tubercle
nTPM: 14.4
1846 Male, age 80, right hemisphere 14.9
2856 Male, age 75, right hemisphere 14.7
2487 Female, age 94, left hemisphere 14.2
1998 Female, age 91, both hemispheres 13.9
Putamen
nTPM: 14.9
2482 Female, age 94, left hemisphere 15.9
2489 Female, age 72, unknown 15.2
1829 Male, age 74, unknown 14.8
1838 Male, age 80, right hemisphere 14.8
2466 Female, age 79, unknown 14.8
1937 Female, age 91, right hemisphere 14.7
2647 Male, age 75, left hemisphere 14.0
Septal nuclei
nTPM: 14.9
2629 Female, age 94, right hemisphere 16.0
2199 Male, age 80, right hemisphere 15.5
2059 Female, age 85, both hemispheres 14.7
2394 Male, age 61, left hemisphere 14.7
2009 Female, age 91, both hemispheres 14.6
1960 Male, age 74, unknown 14.4
2031 Female, age 72, unknown 14.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.9
Samples: 246

Max nTPM: 21.5
Min nTPM: 7.5
Std nTPM: 2.4
Median nTPM: 12.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 21.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 21.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 20.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 19.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 18.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 18.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 18.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 18.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 17.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 17.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 17.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.7
Samples: 246

Max nTPM: 22.0
Min nTPM: 7.4
Std nTPM: 2.4
Median nTPM: 11.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 22.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 21.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 20.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 18.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 18.4
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 17.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 17.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 17.3
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 17.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 16.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 16.9
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Brain - Putamen (basal ganglia)
Average nTPM: 13.4
Samples: 205

Max nTPM: 24.1
Min nTPM: 6.0
Std nTPM: 2.5
Median nTPM: 13.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 24.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 21.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 20.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 19.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 19.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 19.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 18.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 18.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 18.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 18.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 18.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.2
FF:10164-103B2 76 years, female 27.2
Globus pallidus
Scaled Tags Per Million: 28.7
FF:10161-103A8 76 years, female 34.6
FF:10175-103C4 60 years, female 22.8
Nucleus accumbens
Scaled Tags Per Million: 18.5
FF:10037-101F1 23-56 years, mixed 18.5
Putamen
Scaled Tags Per Million: 20.6
FF:10176-103C5 60 years, female 20.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Caudate
nTPM: 11.3
Samples: 4

Max nTPM: 12.4
Min nTPM: 10.5
Sample A Female 11.5
Sample B Female 10.5
Sample C Male 12.4
Sample D Male 10.6
Putamen
nTPM: 15.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.7
Sample A Female 15.9
Sample B Female 13.7
Sample C Male 17.1
Sample D Male 15.2
Septum
nTPM: 13.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 12.9
Sample A Female 13.5
Sample B Female 13.1
Sample C Male 12.9
Sample D Male 13.7
Ventral pallidum
nTPM: 12.8
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 13.4
Sample C Male 12.7
Sample D Male 14.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.9
Samples: 4

Max nTPM: 16.1
Min nTPM: 14.1
Sample A Male 14.3
Sample B Male 15.0
Sample C Female 14.1
Sample D Female 16.1
Septum
nTPM: 14.6
Samples: 4

Max nTPM: 18.2
Min nTPM: 10.4
Sample A Male 10.4
Sample B Male 13.9
Sample C Female 15.9
Sample D Female 18.2
Ventral forebrain
nTPM: 14.2
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.9
Sample A Male 13.1
Sample B Male 14.5
Sample C Female 16.3
Sample D Female 12.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
641529 Antisense, RP_040914_01_E09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
641529 Antisense, RP_040914_01_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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