MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.3 nTPM
HPA:38.3 nTPM
GTEx:127.1 nTPM
FANTOM5:39.9 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:105.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.8
1827 Male, age 72, unknown 39.7
2666 Male, age 74, left hemisphere 37.8
2411 Female, age 72, unknown 36.9
2828 Female, age 72, unknown 35.9
1833 Male, age 53, unknown 35.0
1830 Male, age 51, unknown 34.9
2219 Male, age 76, both hemispheres 33.7
2586 Male, age 75, left hemisphere 32.3
2019 Male, age 18, unknown 31.9
1870 Female, age 42, unknown 29.9
Dorsal raphe nucleus
nTPM: 36.1
1828 Male, age 53, unknown 41.3
2047 Male, age 72, unknown 40.4
2750 Male, age 76, both hemispheres 39.0
2298 Female, age 72, unknown 34.2
2016 Female, age 72, unknown 25.6
Inferior colliculus
nTPM: 26.9
2097 Female, age 72, unknown 28.6
1848 Female, age 42, unknown 26.6
1890 Male, age 53, unknown 26.2
2849 Male, age 72, unknown 26.0
Median raphe nucleus
nTPM: 37.0
2220 Male, age 76, midline 37.0
Pedunculopontine tegmental nucleus
nTPM: 36.6
2334 Male, age 80, both hemispheres 40.7
2338 Male, age 61, both hemispheres 36.2
1921 Female, age 85, both hemispheres 32.9
Periaquaductal grey, anterior
nTPM: 30.1
1795 Male, age 51, unknown 32.3
1947 Male, age 18, unknown 29.3
2502 Female, age 75, unknown 28.8
Periaquaductal grey, dorsal
nTPM: 25.4
2464 Female, age 72, unknown 30.3
2850 Male, age 76, both hemispheres 25.7
1831 Male, age 72, unknown 24.8
1840 Male, age 53, unknown 20.9
Periaquaductal grey, lateral
nTPM: 27.9
2272 Male, age 74, both hemispheres 29.8
2053 Male, age 18, unknown 29.0
2140 Male, age 76, both hemispheres 24.8
Pretectal area
nTPM: 29.5
2007 Male, age 72, unknown 34.3
1815 Male, age 53, unknown 33.1
1817 Female, age 42, unknown 32.3
1816 Male, age 51, unknown 31.8
1944 Female, age 72, unknown 30.9
2825 Male, age 18, unknown 29.7
2407 Male, age 75, both hemispheres 28.2
2273 Male, age 74, both hemispheres 27.4
2224 Female, age 72, unknown 27.3
2316 Male, age 76, right hemisphere 25.4
2667 Female, age 75, unknown 23.7
Red nucleus
nTPM: 36.0
2725 Female, age 75, unknown 45.7
2588 Male, age 74, left hemisphere 40.8
2823 Male, age 76, right hemisphere 38.9
1865 Male, age 51, unknown 37.2
1821 Female, age 72, unknown 37.1
2503 Female, age 72, unknown 34.5
2227 Male, age 72, unknown 34.1
1954 Female, age 42, unknown 33.4
2584 Male, age 75, left hemisphere 33.4
2785 Male, age 18, unknown 32.7
1904 Male, age 53, unknown 32.2
2769 Male, age 72, unknown 31.9
Substantia nigra
nTPM: 38.3
1916 Female, age 42, unknown 55.6
2241 Male, age 72, unknown 41.7
1941 Male, age 53, unknown 40.4
2409 Female, age 72, unknown 40.2
2590 Female, age 75, unknown 36.0
1851 Male, age 51, unknown 35.3
1889 Female, age 72, unknown 35.2
2699 Male, age 18, unknown 33.7
2583 Male, age 75, right hemisphere 32.3
2665 Male, age 74, both hemispheres 32.3
Superior colliculus
nTPM: 28.4
2261 Male, age 18, unknown 35.2
1796 Male, age 53, unknown 33.1
1839 Male, age 51, unknown 30.6
2668 Female, age 75, unknown 30.5
2587 Male, age 74, left hemisphere 29.3
2087 Female, age 72, unknown 27.9
2664 Male, age 75, both hemispheres 27.1
1895 Male, age 76, right hemisphere 25.4
1913 Female, age 42, unknown 23.2
1995 Male, age 72, unknown 21.5
Ventral tegmental area
nTPM: 35.7
2223 Female, age 72, unknown 42.4
2410 Female, age 72, unknown 40.1
1915 Female, age 42, unknown 37.7
2218 Male, age 76, both hemispheres 36.6
2021 Male, age 53, unknown 29.4
1942 Male, age 51, unknown 27.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 127.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.1
Samples: 139

Max nTPM: 329.6
Min nTPM: 25.6
Std nTPM: 62.6
Median nTPM: 116.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 329.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 319.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 295.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 274.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 272.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 265.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 251.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 247.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 239.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 234.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 232.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.9
FF:10158-103A5 76 years, female 39.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.1
Pig sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 34.8
Min nTPM: 17.3
Sample A Female 34.8
Sample B Female 21.0
Sample C Male 17.3
Sample D Male 20.1
Periaqueductal gray
nTPM: 16.1
Samples: 3

Max nTPM: 20.1
Min nTPM: 12.4
Sample B Female 15.7
Sample C Male 20.1
Sample D Male 12.4
Substantia nigra
nTPM: 27.1
Samples: 4

Max nTPM: 58.1
Min nTPM: 9.7
Sample A Female 58.1
Sample B Female 16.6
Sample C Male 24.0
Sample D Male 9.7
Superior colliculi
nTPM: 16.5
Samples: 4

Max nTPM: 23.5
Min nTPM: 8.3
Sample A Female 23.5
Sample B Female 8.3
Sample C Male 15.9
Sample D Male 18.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 105.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 105.9
Samples: 4

Max nTPM: 118.4
Min nTPM: 98.9
Sample A Male 103.0
Sample B Male 98.9
Sample C Female 103.4
Sample D Female 118.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68076552 Antisense, RP_040923_02_G01, Mouse strain C57BL/6J (56 days, male) 0.2
418 Antisense, RP_Baylor_102768, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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