BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:33.9 nTPM
HPA:33.9 nTPM
GTEx:38.4 nTPM
FANTOM5:67.0 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA027288
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.5
2481 Female, age 94, left hemisphere 35.5
2846 Female, age 79, unknown 34.3
2290 Female, age 72, unknown 33.8
1857 Female, age 85, left hemisphere 33.6
2288 Male, age 75, left hemisphere 33.0
1854 Male, age 80, left hemisphere 32.9
2289 Male, age 61, right hemisphere 32.8
1781 Male, age 74, unknown 32.5
Claustrum
nTPM: 32.3
2292 Female, age 85, both hemispheres 33.2
2198 Male, age 80, both hemispheres 32.9
1956 Male, age 74, unknown 32.7
2491 Male, age 75, both hemispheres 32.7
2568 Male, age 61, both hemispheres 32.3
2196 Female, age 79, unknown 32.1
2284 Female, age 91, both hemispheres 31.8
2645 Female, age 72, unknown 31.5
2392 Female, age 94, both hemispheres 31.2
Globus pallidus, externus
nTPM: 33.9
1996 Male, age 80, right hemisphere 34.5
2646 Male, age 61, right hemisphere 33.9
2395 Male, age 75, both hemispheres 33.8
2567 Female, age 72, unknown 33.8
2772 Female, age 79, unknown 33.2
Globus pallidus, internus
nTPM: 33.8
2037 Male, age 80, right hemisphere 34.9
2287 Male, age 75, right hemisphere 34.9
2111 Female, age 85, right hemisphere 34.0
2483 Female, age 94, right hemisphere 33.8
2566 Female, age 72, unknown 33.5
1818 Male, age 74, unknown 33.0
2778 Female, age 91, both hemispheres 32.5
Nucleus accumbens
nTPM: 33.1
1806 Female, age 85, left hemisphere 33.7
2286 Male, age 75, left hemisphere 33.4
2698 Female, age 72, unknown 33.3
1783 Male, age 74, unknown 33.2
2391 Female, age 94, left hemisphere 33.0
2824 Male, age 61, right hemisphere 32.9
1856 Female, age 91, right hemisphere 32.8
2732 Male, age 80, right hemisphere 32.1
Nucleus basalis of Meynert
nTPM: 33.3
2569 Male, age 61, both hemispheres 34.4
2821 Male, age 75, both hemispheres 33.5
2393 Male, age 80, right hemisphere 32.7
2484 Female, age 94, left hemisphere 32.5
Nucleus of the diagonal band
nTPM: 32.2
1812 Female, age 91, both hemispheres 32.9
2029 Male, age 61, right hemisphere 32.6
2195 Female, age 85, both hemispheres 32.1
2775 Male, age 80, right hemisphere 31.8
1979 Male, age 74, unknown 31.6
Olfactory tubercle
nTPM: 32.2
1846 Male, age 80, right hemisphere 33.5
2856 Male, age 75, right hemisphere 32.3
1998 Female, age 91, both hemispheres 31.8
2487 Female, age 94, left hemisphere 31.4
Putamen
nTPM: 33.5
1829 Male, age 74, unknown 34.6
2647 Male, age 75, left hemisphere 33.8
2489 Female, age 72, unknown 33.6
1838 Male, age 80, right hemisphere 33.4
2482 Female, age 94, left hemisphere 33.4
2466 Female, age 79, unknown 33.1
1937 Female, age 91, right hemisphere 32.7
Septal nuclei
nTPM: 31.6
2059 Female, age 85, both hemispheres 32.1
2199 Male, age 80, right hemisphere 32.1
1960 Male, age 74, unknown 32.0
2629 Female, age 94, right hemisphere 31.6
2009 Female, age 91, both hemispheres 31.4
2031 Female, age 72, unknown 31.4
2394 Male, age 61, left hemisphere 30.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.8
Samples: 246

Max nTPM: 58.5
Min nTPM: 19.1
Std nTPM: 7.1
Median nTPM: 33.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 58.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 56.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 53.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 52.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 51.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 51.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 50.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 49.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 49.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 48.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.3
Samples: 246

Max nTPM: 58.0
Min nTPM: 16.3
Std nTPM: 6.7
Median nTPM: 32.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 58.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 54.6
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 50.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 50.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 49.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 49.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 49.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 48.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 48.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 48.0
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 47.2
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Brain - Putamen (basal ganglia)
Average nTPM: 38.4
Samples: 205

Max nTPM: 76.6
Min nTPM: 21.0
Std nTPM: 9.0
Median nTPM: 37.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 76.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 72.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 69.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 66.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 64.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 62.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 59.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 57.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 57.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 55.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 55.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.2
FF:10164-103B2 76 years, female 46.2
Globus pallidus
Scaled Tags Per Million: 59.8
FF:10161-103A8 76 years, female 71.5
FF:10175-103C4 60 years, female 48.1
Nucleus accumbens
Scaled Tags Per Million: 50.7
FF:10037-101F1 23-56 years, mixed 50.7
Putamen
Scaled Tags Per Million: 67.0
FF:10176-103C5 60 years, female 67.0

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The Human Protein Atlas

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