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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:68.2 nTPM
HPA:68.2 nTPM
GTEx:81.2 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 68.2
Sample id Sample description nTPM
Amygdala
nTPM: 65.6
2517 Female, age 94, left hemisphere 69.2
2695 Female, age 67, right hemisphere 67.5
2514 Male, age 75, right hemisphere 67.4
1987 Female, age 91, left hemisphere 66.3
2814 Male, age 76, right hemisphere 57.6
Basal amygdala
nTPM: 67.6
2609 Male, age 75, right hemisphere 73.8
2243 Female, age 91, right hemisphere 69.7
2827 Female, age 67, right hemisphere 67.9
2110 Male, age 80, left hemisphere 66.3
2685 Female, age 94, left hemisphere 65.7
1955 Male, age 76, both hemispheres 62.3
Central amygdala
nTPM: 68.2
2826 Female, age 94, left hemisphere 80.9
2515 Male, age 75, right hemisphere 74.1
2239 Male, age 80, left hemisphere 66.0
2701 Female, age 91, right hemisphere 62.5
1905 Male, age 76, both hemispheres 57.7
Corticomedial amygdala
nTPM: 66.2
2428 Male, age 75, right hemisphere 73.0
2829 Male, age 80, left hemisphere 67.7
2242 Female, age 91, right hemisphere 67.1
2535 Female, age 67, right hemisphere 66.4
2429 Female, age 94, left hemisphere 62.4
2240 Male, age 76, both hemispheres 60.6
Lateral amygdala
nTPM: 68.2
2534 Female, age 94, left hemisphere 74.6
2256 Male, age 80, left hemisphere 70.6
2830 Female, age 67, right hemisphere 70.5
2516 Male, age 75, right hemisphere 69.6
2255 Female, age 91, right hemisphere 65.4
1883 Male, age 76, both hemispheres 58.6
Stria terminalis, bed nucleus
nTPM: 62.5
2201 Male, age 74, unknown 63.7
1974 Female, age 91, both hemispheres 63.3
2486 Female, age 94, both hemispheres 60.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 81.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 81.2
Samples: 152

Max nTPM: 171.9
Min nTPM: 28.6
Std nTPM: 30.3
Median nTPM: 77.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 171.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 162.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 162.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 161.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 156.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 155.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 153.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 153.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 140.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 139.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 137.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 136.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 136.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 135.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 127.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 126.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 124.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 123.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 121.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 119.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 117.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 114.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 109.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 104.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 103.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 103.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 102.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 100.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 98.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 96.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 96.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 95.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 93.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 93.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 92.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 91.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 91.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 91.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 90.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 90.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 89.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 89.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 88.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 88.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 88.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 87.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 87.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 87.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 87.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 87.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 86.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 86.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 86.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 85.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 83.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 83.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 83.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 83.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 83.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 83.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 83.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 82.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 82.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 82.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 81.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 80.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 79.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 79.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 79.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 79.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 78.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 77.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 76.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 76.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 76.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 76.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 75.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 75.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 75.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 74.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 74.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 73.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 73.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 73.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 71.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 71.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 70.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 70.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 70.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 69.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 69.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 69.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 67.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 67.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 66.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 66.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 64.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 64.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 64.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 63.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 63.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 62.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 62.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 62.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 61.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 60.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 59.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 59.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 59.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 59.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 59.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 59.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 58.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 58.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 57.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 57.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 55.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 54.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 54.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 53.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 53.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 52.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 51.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 51.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 50.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 50.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 50.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 50.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 49.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 48.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 48.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 48.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 48.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 47.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 47.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 46.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 45.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 45.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 42.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 40.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 39.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 39.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 38.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 34.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 34.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 30.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 13.2
FF:10151-102I7 76 years, female 13.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1.4
Pig sample Sample description nTPM
Amygdala
nTPM: 1.4
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.7
Sample A Female 2.2
Sample B Female 1.1
Sample C Male 1.6
Sample D Male 0.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
76097730 Antisense, RP_060626_01_E02, Mouse strain C57BL/6J (56 days, male) 0.2

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