MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA:53.3 nTPM
GTEx:43.4 nTPM
FANTOM5:104.7 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:20.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.7
2586 Male, age 75, left hemisphere 51.7
1870 Female, age 42, unknown 49.8
2219 Male, age 76, both hemispheres 49.8
1827 Male, age 72, unknown 49.7
2019 Male, age 18, unknown 49.7
1830 Male, age 51, unknown 49.6
2828 Female, age 72, unknown 49.5
1833 Male, age 53, unknown 49.3
2666 Male, age 74, left hemisphere 49.0
2411 Female, age 72, unknown 48.6
Dorsal raphe nucleus
nTPM: 50.0
2298 Female, age 72, unknown 50.9
2750 Male, age 76, both hemispheres 50.8
2047 Male, age 72, unknown 50.5
1828 Male, age 53, unknown 50.4
2016 Female, age 72, unknown 47.6
Inferior colliculus
nTPM: 48.9
1890 Male, age 53, unknown 50.0
1848 Female, age 42, unknown 49.4
2097 Female, age 72, unknown 48.2
2849 Male, age 72, unknown 48.2
Median raphe nucleus
nTPM: 52.4
2220 Male, age 76, midline 52.4
Pedunculopontine tegmental nucleus
nTPM: 50.8
2338 Male, age 61, both hemispheres 51.7
2334 Male, age 80, both hemispheres 51.6
1921 Female, age 85, both hemispheres 49.0
Periaquaductal grey, anterior
nTPM: 50.7
2502 Female, age 75, unknown 51.5
1947 Male, age 18, unknown 51.1
1795 Male, age 51, unknown 49.6
Periaquaductal grey, dorsal
nTPM: 48.2
1840 Male, age 53, unknown 49.1
2850 Male, age 76, both hemispheres 48.6
1831 Male, age 72, unknown 48.2
2464 Female, age 72, unknown 47.0
Periaquaductal grey, lateral
nTPM: 49.0
2272 Male, age 74, both hemispheres 50.5
2053 Male, age 18, unknown 49.4
2140 Male, age 76, both hemispheres 47.2
Pretectal area
nTPM: 50.6
1944 Female, age 72, unknown 55.1
1816 Male, age 51, unknown 53.7
1817 Female, age 42, unknown 51.8
2007 Male, age 72, unknown 51.5
2273 Male, age 74, both hemispheres 50.8
1815 Male, age 53, unknown 50.5
2316 Male, age 76, right hemisphere 49.2
2224 Female, age 72, unknown 49.1
2407 Male, age 75, both hemispheres 49.0
2667 Female, age 75, unknown 48.5
2825 Male, age 18, unknown 47.9
Red nucleus
nTPM: 51.3
2503 Female, age 72, unknown 55.0
1821 Female, age 72, unknown 52.1
2725 Female, age 75, unknown 52.1
2588 Male, age 74, left hemisphere 51.8
1865 Male, age 51, unknown 51.2
1904 Male, age 53, unknown 51.0
1954 Female, age 42, unknown 50.9
2769 Male, age 72, unknown 50.6
2785 Male, age 18, unknown 50.6
2823 Male, age 76, right hemisphere 50.4
2227 Male, age 72, unknown 49.8
2584 Male, age 75, left hemisphere 49.8
Substantia nigra
nTPM: 53.3
1916 Female, age 42, unknown 56.3
1851 Male, age 51, unknown 54.9
2699 Male, age 18, unknown 54.8
2241 Male, age 72, unknown 53.5
2409 Female, age 72, unknown 52.9
2590 Female, age 75, unknown 52.6
1889 Female, age 72, unknown 52.4
2583 Male, age 75, right hemisphere 52.3
1941 Male, age 53, unknown 51.9
2665 Male, age 74, both hemispheres 50.9
Superior colliculus
nTPM: 50.3
2087 Female, age 72, unknown 51.8
1796 Male, age 53, unknown 51.5
2261 Male, age 18, unknown 51.4
2668 Female, age 75, unknown 51.4
1995 Male, age 72, unknown 51.2
1913 Female, age 42, unknown 50.9
2587 Male, age 74, left hemisphere 50.8
1839 Male, age 51, unknown 49.2
2664 Male, age 75, both hemispheres 47.8
1895 Male, age 76, right hemisphere 47.5
Ventral tegmental area
nTPM: 50.8
2218 Male, age 76, both hemispheres 52.6
1915 Female, age 42, unknown 52.5
2410 Female, age 72, unknown 51.2
2223 Female, age 72, unknown 51.0
1942 Male, age 51, unknown 48.9
2021 Male, age 53, unknown 48.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.4
Samples: 139

Max nTPM: 101.3
Min nTPM: 4.9
Std nTPM: 17.0
Median nTPM: 43.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 101.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 82.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 78.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 77.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 76.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 74.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 73.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 71.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 70.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 68.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.7
FF:10158-103A5 76 years, female 104.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.0
Pig sample Sample description nTPM
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.7
Sample A Female 12.7
Sample B Female 9.3
Sample C Male 9.1
Sample D Male 8.7
Periaqueductal gray
nTPM: 9.1
Samples: 3

Max nTPM: 9.7
Min nTPM: 8.6
Sample B Female 8.6
Sample C Male 9.1
Sample D Male 9.7
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.8
Sample A Female 10.2
Sample B Female 8.8
Sample C Male 9.7
Sample D Male 10.9
Superior colliculi
nTPM: 9.3
Samples: 4

Max nTPM: 9.9
Min nTPM: 8.0
Sample A Female 9.9
Sample B Female 8.0
Sample C Male 9.6
Sample D Male 9.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.5
Min nTPM: 18.4
Sample A Male 18.4
Sample B Male 19.0
Sample C Female 22.5
Sample D Female 20.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68162213 Antisense, RP_041122_01_H01, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.