HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.5 nTPM
HPA:30.5 nTPM
GTEx:29.3 nTPM
FANTOM5:224.3 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:12.8 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.5
Sample id Sample description nTPM
Hippocampus
nTPM: 30.5
2621 Female, age 67, right hemisphere 34.1
2148 Female, age 91, left hemisphere 33.4
2529 Female, age 94, left hemisphere 31.1
1911 Female, age 85, right hemisphere 28.7
1898 Male, age 80, left hemisphere 28.0
1855 Male, age 76, left hemisphere 27.5
Dentate gyrus
nTPM: 30.1
2010 Male, age 76, both hemispheres 35.9
2531 Female, age 67, both hemispheres 32.2
2528 Male, age 74, both hemispheres 31.9
2246 Female, age 85, both hemispheres 29.0
2530 Female, age 94, left hemisphere 28.6
1927 Female, age 91, both hemispheres 22.8
Entorhinal gyrus
nTPM: 25.4
2117 Female, age 91, right hemisphere 35.0
1787 Male, age 76, left hemisphere 28.5
1938 Female, age 85, left hemisphere 24.2
2764 Male, age 80, right hemisphere 23.9
2613 Female, age 94, left hemisphere 21.4
2686 Male, age 75, right hemisphere 19.4
Hippocampus, CA1
nTPM: 26.7
2045 Male, age 76, both hemispheres 38.1
2527 Male, age 74, both hemispheres 27.7
1873 Female, age 85, both hemispheres 27.4
2082 Female, age 91, right hemisphere 24.4
2749 Male, age 80, left hemisphere 15.7
Hippocampus, CA2
nTPM: 27.2
1940 Female, age 85, left hemisphere 38.8
2249 Male, age 74, both hemispheres 30.6
2113 Female, age 91, right hemisphere 27.3
1963 Male, age 80, left hemisphere 23.4
2437 Female, age 94, left hemisphere 23.2
1892 Male, age 76, both hemispheres 19.7
Hippocampus, CA3
nTPM: 26.8
2620 Female, age 94, left hemisphere 38.8
1891 Female, age 85, both hemispheres 29.8
2861 Female, age 67, both hemispheres 28.5
1867 Male, age 76, both hemispheres 25.8
2436 Male, age 74, both hemispheres 21.4
2137 Male, age 80, left hemisphere 16.8
Parahippocampal cortex
nTPM: 24.9
2018 Male, age 76, both hemispheres 34.6
2250 Female, age 67, right hemisphere 33.9
2532 Female, age 72, left hemisphere 26.0
2692 Male, age 74, both hemispheres 25.1
1990 Female, age 91, right hemisphere 24.3
2245 Female, age 91, both hemispheres 24.2
2622 Female, age 67, right hemisphere 21.5
1850 Male, age 80, both hemispheres 21.1
1933 Female, age 85, both hemispheres 19.7
2693 Female, age 94, both hemispheres 19.1
Perirhinal gyrus
nTPM: 20.5
1794 Male, age 80, right hemisphere 22.0
2848 Male, age 76, right hemisphere 21.7
2521 Female, age 94, right hemisphere 20.9
1841 Female, age 85, right hemisphere 19.2
1847 Female, age 91, left hemisphere 18.5
Subiculum
nTPM: 30.2
2729 Female, age 91, right hemisphere 36.5
2042 Male, age 76, both hemispheres 36.3
2619 Male, age 74, both hemispheres 32.5
1901 Male, age 80, both hemispheres 26.1
2438 Female, age 94, left hemisphere 25.1
1977 Female, age 85, both hemispheres 24.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.3
Samples: 197

Max nTPM: 61.1
Min nTPM: 8.8
Std nTPM: 9.9
Median nTPM: 29.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 61.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 59.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 55.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 55.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 53.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 51.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 51.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 51.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 48.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 46.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 46.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 224.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 224.3
FF:10153-102I9 76 years, female 284.3
FF:10169-103B7 60 years, female 164.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 24.0
Samples: 4

Max nTPM: 28.6
Min nTPM: 20.4
Sample A Female 28.6
Sample B Female 20.4
Sample C Male 26.6
Sample D Male 20.5
Entorhinal cortex
nTPM: 15.8
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.1
Sample A Female 15.9
Sample B Female 16.0
Sample C Male 18.0
Sample D Male 13.1
Subiculum
nTPM: 20.3
Samples: 4

Max nTPM: 23.5
Min nTPM: 17.4
Sample A Female 23.5
Sample B Female 22.3
Sample C Male 17.4
Sample D Male 17.8
Ventral hippocampus
nTPM: 21.4
Samples: 4

Max nTPM: 23.7
Min nTPM: 19.3
Sample A Female 22.1
Sample B Female 19.3
Sample C Male 23.7
Sample D Male 20.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.8
Samples: 4

Max nTPM: 16.5
Min nTPM: 8.6
Sample A Male 16.5
Sample B Male 14.9
Sample C Female 11.0
Sample D Female 8.6
Hippocampal formation
nTPM: 12.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.8
Sample A Male 13.4
Sample B Male 12.0
Sample C Female 11.8
Sample D Female 12.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
73521802 Antisense, RP_051101_03_A01, Mouse strain C57BL/6J (56 days, male) 0.3
69816506 Antisense, RP_050510_01_C03, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.