MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:91.4 nTPM
HPA:91.4 nTPM
GTEx:107.7 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:23.8 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 91.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.0
2586 Male, age 75, left hemisphere 98.1
2019 Male, age 18, unknown 88.5
2828 Female, age 72, unknown 85.6
2411 Female, age 72, unknown 84.7
2666 Male, age 74, left hemisphere 83.4
1830 Male, age 51, unknown 83.0
1827 Male, age 72, unknown 82.9
1833 Male, age 53, unknown 82.6
1870 Female, age 42, unknown 81.3
2219 Male, age 76, both hemispheres 69.5
Dorsal raphe nucleus
nTPM: 73.6
2750 Male, age 76, both hemispheres 82.0
1828 Male, age 53, unknown 74.6
2016 Female, age 72, unknown 71.5
2047 Male, age 72, unknown 70.9
2298 Female, age 72, unknown 68.7
Inferior colliculus
nTPM: 73.9
1848 Female, age 42, unknown 77.2
1890 Male, age 53, unknown 74.6
2849 Male, age 72, unknown 73.9
2097 Female, age 72, unknown 70.1
Median raphe nucleus
nTPM: 68.4
2220 Male, age 76, midline 68.4
Pedunculopontine tegmental nucleus
nTPM: 77.7
2338 Male, age 61, both hemispheres 81.1
2334 Male, age 80, both hemispheres 76.5
1921 Female, age 85, both hemispheres 75.5
Periaquaductal grey, anterior
nTPM: 75.5
1795 Male, age 51, unknown 75.8
1947 Male, age 18, unknown 75.5
2502 Female, age 75, unknown 75.1
Periaquaductal grey, dorsal
nTPM: 68.4
2464 Female, age 72, unknown 73.3
1831 Male, age 72, unknown 72.9
1840 Male, age 53, unknown 64.0
2850 Male, age 76, both hemispheres 63.3
Periaquaductal grey, lateral
nTPM: 66.3
2053 Male, age 18, unknown 69.0
2272 Male, age 74, both hemispheres 67.5
2140 Male, age 76, both hemispheres 62.5
Pretectal area
nTPM: 76.6
2007 Male, age 72, unknown 87.0
1817 Female, age 42, unknown 85.8
1815 Male, age 53, unknown 82.8
1816 Male, age 51, unknown 81.1
1944 Female, age 72, unknown 77.5
2667 Female, age 75, unknown 74.8
2407 Male, age 75, both hemispheres 74.2
2825 Male, age 18, unknown 73.5
2316 Male, age 76, right hemisphere 73.1
2273 Male, age 74, both hemispheres 66.5
2224 Female, age 72, unknown 66.0
Red nucleus
nTPM: 91.4
2588 Male, age 74, left hemisphere 97.4
2823 Male, age 76, right hemisphere 96.7
2785 Male, age 18, unknown 95.4
1821 Female, age 72, unknown 92.7
2769 Male, age 72, unknown 92.7
1865 Male, age 51, unknown 92.2
1904 Male, age 53, unknown 91.0
1954 Female, age 42, unknown 90.2
2227 Male, age 72, unknown 89.2
2584 Male, age 75, left hemisphere 87.4
2503 Female, age 72, unknown 87.2
2725 Female, age 75, unknown 85.4
Substantia nigra
nTPM: 79.0
2583 Male, age 75, right hemisphere 91.6
1941 Male, age 53, unknown 81.3
1916 Female, age 42, unknown 80.8
1851 Male, age 51, unknown 80.7
1889 Female, age 72, unknown 80.6
2665 Male, age 74, both hemispheres 79.2
2590 Female, age 75, unknown 78.2
2409 Female, age 72, unknown 76.8
2699 Male, age 18, unknown 72.9
2241 Male, age 72, unknown 67.4
Superior colliculus
nTPM: 79.9
2668 Female, age 75, unknown 87.3
1796 Male, age 53, unknown 82.2
1895 Male, age 76, right hemisphere 81.1
2664 Male, age 75, both hemispheres 80.4
1995 Male, age 72, unknown 80.3
1913 Female, age 42, unknown 79.9
2587 Male, age 74, left hemisphere 79.4
2261 Male, age 18, unknown 77.2
2087 Female, age 72, unknown 75.7
1839 Male, age 51, unknown 75.4
Ventral tegmental area
nTPM: 76.8
2223 Female, age 72, unknown 83.4
2410 Female, age 72, unknown 80.7
1915 Female, age 42, unknown 77.2
2218 Male, age 76, both hemispheres 76.0
1942 Male, age 51, unknown 73.4
2021 Male, age 53, unknown 70.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 107.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.7
Samples: 139

Max nTPM: 237.1
Min nTPM: 50.7
Std nTPM: 25.8
Median nTPM: 104.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 237.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 204.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 196.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 160.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 159.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 153.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 151.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 146.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 144.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 143.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 142.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.2
Pig sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 50.4
Min nTPM: 32.8
Sample A Female 50.4
Sample B Female 35.0
Sample C Male 34.5
Sample D Male 32.8
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 27.8
Min nTPM: 24.6
Sample B Female 27.8
Sample C Male 27.8
Sample D Male 24.6
Substantia nigra
nTPM: 34.8
Samples: 4

Max nTPM: 40.9
Min nTPM: 25.3
Sample A Female 40.9
Sample B Female 25.3
Sample C Male 36.7
Sample D Male 36.2
Superior colliculi
nTPM: 37.1
Samples: 4

Max nTPM: 42.8
Min nTPM: 28.8
Sample A Female 42.8
Sample B Female 28.8
Sample C Male 36.2
Sample D Male 40.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 27.6
Min nTPM: 20.1
Sample A Male 27.6
Sample B Male 20.1
Sample C Female 21.9
Sample D Female 25.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
67755429 Antisense, RP_040922_01_C06, Mouse strain C57BL/6J (56 days, male) 2.4
68196959 Antisense, RP_040922_01_C06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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