MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.4 nTPM
HPA:21.4 nTPM
GTEx:18.4 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:7.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.3
2019 Male, age 18, unknown 22.4
2411 Female, age 72, unknown 22.2
1830 Male, age 51, unknown 22.1
2586 Male, age 75, left hemisphere 22.1
2666 Male, age 74, left hemisphere 21.8
1827 Male, age 72, unknown 21.1
1833 Male, age 53, unknown 21.0
2828 Female, age 72, unknown 20.6
1870 Female, age 42, unknown 20.4
2219 Male, age 76, both hemispheres 19.6
Dorsal raphe nucleus
nTPM: 19.2
2750 Male, age 76, both hemispheres 20.4
2016 Female, age 72, unknown 19.6
1828 Male, age 53, unknown 19.1
2047 Male, age 72, unknown 19.0
2298 Female, age 72, unknown 17.8
Inferior colliculus
nTPM: 20.1
2097 Female, age 72, unknown 20.3
1848 Female, age 42, unknown 20.1
1890 Male, age 53, unknown 20.1
2849 Male, age 72, unknown 19.9
Median raphe nucleus
nTPM: 18.5
2220 Male, age 76, midline 18.5
Pedunculopontine tegmental nucleus
nTPM: 20.4
2338 Male, age 61, both hemispheres 21.5
2334 Male, age 80, both hemispheres 20.0
1921 Female, age 85, both hemispheres 19.7
Periaquaductal grey, anterior
nTPM: 19.5
1947 Male, age 18, unknown 20.2
2502 Female, age 75, unknown 19.3
1795 Male, age 51, unknown 18.9
Periaquaductal grey, dorsal
nTPM: 19.0
1831 Male, age 72, unknown 20.3
2464 Female, age 72, unknown 19.2
1840 Male, age 53, unknown 18.9
2850 Male, age 76, both hemispheres 17.7
Periaquaductal grey, lateral
nTPM: 19.6
2053 Male, age 18, unknown 20.5
2272 Male, age 74, both hemispheres 19.8
2140 Male, age 76, both hemispheres 18.4
Pretectal area
nTPM: 20.7
2407 Male, age 75, both hemispheres 23.2
2316 Male, age 76, right hemisphere 22.2
1815 Male, age 53, unknown 21.6
2007 Male, age 72, unknown 21.4
1817 Female, age 42, unknown 20.9
1816 Male, age 51, unknown 20.4
2825 Male, age 18, unknown 19.8
1944 Female, age 72, unknown 19.7
2224 Female, age 72, unknown 19.7
2273 Male, age 74, both hemispheres 19.7
2667 Female, age 75, unknown 18.9
Red nucleus
nTPM: 21.4
1954 Female, age 42, unknown 22.5
2823 Male, age 76, right hemisphere 22.3
2588 Male, age 74, left hemisphere 21.9
1865 Male, age 51, unknown 21.8
2503 Female, age 72, unknown 21.8
2227 Male, age 72, unknown 21.7
2584 Male, age 75, left hemisphere 21.7
1904 Male, age 53, unknown 21.2
1821 Female, age 72, unknown 21.1
2785 Male, age 18, unknown 20.8
2769 Male, age 72, unknown 20.4
2725 Female, age 75, unknown 19.4
Substantia nigra
nTPM: 20.1
2583 Male, age 75, right hemisphere 23.3
2590 Female, age 75, unknown 22.6
2665 Male, age 74, both hemispheres 21.2
1941 Male, age 53, unknown 20.6
1889 Female, age 72, unknown 20.1
2241 Male, age 72, unknown 19.9
1916 Female, age 42, unknown 19.1
1851 Male, age 51, unknown 18.8
2699 Male, age 18, unknown 18.7
2409 Female, age 72, unknown 16.5
Superior colliculus
nTPM: 21.2
2668 Female, age 75, unknown 22.8
2587 Male, age 74, left hemisphere 21.9
1796 Male, age 53, unknown 21.4
1839 Male, age 51, unknown 21.4
1913 Female, age 42, unknown 21.4
1895 Male, age 76, right hemisphere 21.1
2261 Male, age 18, unknown 21.1
2087 Female, age 72, unknown 20.6
2664 Male, age 75, both hemispheres 20.5
1995 Male, age 72, unknown 20.4
Ventral tegmental area
nTPM: 20.0
1942 Male, age 51, unknown 20.9
2410 Female, age 72, unknown 20.4
2223 Female, age 72, unknown 20.3
2218 Male, age 76, both hemispheres 19.7
1915 Female, age 42, unknown 19.5
2021 Male, age 53, unknown 18.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.4
Samples: 139

Max nTPM: 26.9
Min nTPM: 10.9
Std nTPM: 3.2
Median nTPM: 18.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 26.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 25.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 24.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 24.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 24.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 23.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.7
Sample A Female 6.1
Sample B Female 5.7
Sample C Male 7.1
Sample D Male 6.4
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 5.6
Min nTPM: 5.4
Sample B Female 5.5
Sample C Male 5.6
Sample D Male 5.4
Substantia nigra
nTPM: 5.4
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.8
Sample A Female 5.3
Sample B Female 5.0
Sample C Male 4.8
Sample D Male 6.3
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 7.1
Sample C Male 8.3
Sample D Male 8.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.0
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.5
Sample A Male 8.3
Sample B Male 7.3
Sample C Female 5.5
Sample D Female 7.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69874192 Antisense, RP_050512_02_H02, Mouse strain C57BL/6J (56 days, male) 0.3
73992919 Antisense, RP_051214_01_F11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.