MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85.6 nTPM
HPA:85.6 nTPM
GTEx:98.6 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:58.2 nTPM
Mouse:31.3 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.9
2019 Male, age 18, unknown 87.3
2411 Female, age 72, unknown 82.5
2586 Male, age 75, left hemisphere 81.0
2219 Male, age 76, both hemispheres 77.0
1827 Male, age 72, unknown 75.9
2828 Female, age 72, unknown 75.7
2666 Male, age 74, left hemisphere 73.7
1870 Female, age 42, unknown 72.6
1833 Male, age 53, unknown 72.5
1830 Male, age 51, unknown 70.5
Dorsal raphe nucleus
nTPM: 78.3
1828 Male, age 53, unknown 85.7
2750 Male, age 76, both hemispheres 78.7
2047 Male, age 72, unknown 78.3
2298 Female, age 72, unknown 77.9
2016 Female, age 72, unknown 71.1
Inferior colliculus
nTPM: 80.9
2097 Female, age 72, unknown 90.9
1890 Male, age 53, unknown 89.8
1848 Female, age 42, unknown 75.3
2849 Male, age 72, unknown 67.8
Median raphe nucleus
nTPM: 79.5
2220 Male, age 76, midline 79.5
Pedunculopontine tegmental nucleus
nTPM: 77.3
1921 Female, age 85, both hemispheres 83.8
2334 Male, age 80, both hemispheres 77.8
2338 Male, age 61, both hemispheres 70.4
Periaquaductal grey, anterior
nTPM: 73.0
2502 Female, age 75, unknown 75.6
1795 Male, age 51, unknown 72.2
1947 Male, age 18, unknown 71.4
Periaquaductal grey, dorsal
nTPM: 69.7
2464 Female, age 72, unknown 73.5
1831 Male, age 72, unknown 71.6
2850 Male, age 76, both hemispheres 67.8
1840 Male, age 53, unknown 66.0
Periaquaductal grey, lateral
nTPM: 69.9
2272 Male, age 74, both hemispheres 72.6
2053 Male, age 18, unknown 71.0
2140 Male, age 76, both hemispheres 66.0
Pretectal area
nTPM: 80.1
1817 Female, age 42, unknown 92.5
1816 Male, age 51, unknown 91.7
2007 Male, age 72, unknown 89.4
2667 Female, age 75, unknown 86.0
1944 Female, age 72, unknown 85.8
1815 Male, age 53, unknown 81.9
2224 Female, age 72, unknown 74.1
2273 Male, age 74, both hemispheres 73.1
2316 Male, age 76, right hemisphere 73.0
2825 Male, age 18, unknown 68.1
2407 Male, age 75, both hemispheres 65.3
Red nucleus
nTPM: 84.2
1821 Female, age 72, unknown 102.3
1954 Female, age 42, unknown 89.1
2503 Female, age 72, unknown 88.5
1904 Male, age 53, unknown 87.2
2785 Male, age 18, unknown 85.1
1865 Male, age 51, unknown 84.4
2227 Male, age 72, unknown 83.9
2823 Male, age 76, right hemisphere 83.4
2769 Male, age 72, unknown 83.3
2588 Male, age 74, left hemisphere 79.2
2725 Female, age 75, unknown 77.9
2584 Male, age 75, left hemisphere 66.3
Substantia nigra
nTPM: 85.6
1916 Female, age 42, unknown 101.0
1851 Male, age 51, unknown 91.9
1889 Female, age 72, unknown 91.3
2241 Male, age 72, unknown 91.1
1941 Male, age 53, unknown 84.9
2409 Female, age 72, unknown 84.6
2699 Male, age 18, unknown 83.0
2665 Male, age 74, both hemispheres 79.3
2590 Female, age 75, unknown 75.5
2583 Male, age 75, right hemisphere 73.5
Superior colliculus
nTPM: 75.3
2087 Female, age 72, unknown 81.5
2668 Female, age 75, unknown 79.9
1895 Male, age 76, right hemisphere 78.9
2261 Male, age 18, unknown 78.1
2587 Male, age 74, left hemisphere 75.4
1796 Male, age 53, unknown 74.7
1913 Female, age 42, unknown 72.5
1995 Male, age 72, unknown 72.5
1839 Male, age 51, unknown 71.0
2664 Male, age 75, both hemispheres 68.1
Ventral tegmental area
nTPM: 82.3
2410 Female, age 72, unknown 93.6
2218 Male, age 76, both hemispheres 88.4
1915 Female, age 42, unknown 88.0
1942 Male, age 51, unknown 76.6
2223 Female, age 72, unknown 76.4
2021 Male, age 53, unknown 70.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 98.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.6
Samples: 139

Max nTPM: 244.8
Min nTPM: 45.2
Std nTPM: 30.3
Median nTPM: 92.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 244.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 205.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 195.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 190.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 184.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 157.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 146.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 145.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 143.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 139.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 138.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.2
Pig sample Sample description nTPM
Midbrain
nTPM: 56.7
Samples: 4

Max nTPM: 67.0
Min nTPM: 49.4
Sample A Female 57.1
Sample B Female 49.4
Sample C Male 67.0
Sample D Male 53.4
Periaqueductal gray
nTPM: 43.7
Samples: 3

Max nTPM: 48.6
Min nTPM: 38.8
Sample B Female 48.6
Sample C Male 43.6
Sample D Male 38.8
Substantia nigra
nTPM: 47.0
Samples: 4

Max nTPM: 55.4
Min nTPM: 39.7
Sample A Female 55.4
Sample B Female 39.7
Sample C Male 49.3
Sample D Male 43.5
Superior colliculi
nTPM: 58.2
Samples: 4

Max nTPM: 72.9
Min nTPM: 42.0
Sample A Female 61.7
Sample B Female 42.0
Sample C Male 72.9
Sample D Male 56.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.3
Samples: 4

Max nTPM: 33.8
Min nTPM: 28.8
Sample A Male 33.8
Sample B Male 30.7
Sample C Female 28.8
Sample D Female 31.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69262300 Antisense, RP_050303_01_G06, Mouse strain C57BL/6J (56 days, male) 6.2
77280419 Antisense, RP_070116_01_E02, Mouse strain C57BL/6J (56 days, male) 6.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.