MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.6 nTPM
HPA:34.6 nTPM
GTEx:30.0 nTPM
FANTOM5:62.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.1
2219 Male, age 76, both hemispheres 28.0
2411 Female, age 72, unknown 27.0
1833 Male, age 53, unknown 26.3
1830 Male, age 51, unknown 26.0
1870 Female, age 42, unknown 25.7
2019 Male, age 18, unknown 25.6
1827 Male, age 72, unknown 22.7
2828 Female, age 72, unknown 21.8
2666 Male, age 74, left hemisphere 20.9
2586 Male, age 75, left hemisphere 17.3
Dorsal raphe nucleus
nTPM: 27.7
2750 Male, age 76, both hemispheres 30.7
2047 Male, age 72, unknown 30.3
2298 Female, age 72, unknown 28.2
1828 Male, age 53, unknown 26.8
2016 Female, age 72, unknown 22.6
Inferior colliculus
nTPM: 26.8
2097 Female, age 72, unknown 29.8
1848 Female, age 42, unknown 26.5
1890 Male, age 53, unknown 25.7
2849 Male, age 72, unknown 25.0
Median raphe nucleus
nTPM: 34.6
2220 Male, age 76, midline 34.6
Pedunculopontine tegmental nucleus
nTPM: 28.3
1921 Female, age 85, both hemispheres 29.1
2334 Male, age 80, both hemispheres 29.1
2338 Male, age 61, both hemispheres 26.6
Periaquaductal grey, anterior
nTPM: 25.7
1947 Male, age 18, unknown 28.6
2502 Female, age 75, unknown 26.0
1795 Male, age 51, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 24.8
2850 Male, age 76, both hemispheres 26.2
1840 Male, age 53, unknown 24.9
2464 Female, age 72, unknown 24.6
1831 Male, age 72, unknown 23.4
Periaquaductal grey, lateral
nTPM: 23.9
2272 Male, age 74, both hemispheres 28.3
2053 Male, age 18, unknown 22.8
2140 Male, age 76, both hemispheres 20.5
Pretectal area
nTPM: 26.0
2667 Female, age 75, unknown 30.1
2224 Female, age 72, unknown 28.9
1944 Female, age 72, unknown 27.0
2007 Male, age 72, unknown 26.7
2407 Male, age 75, both hemispheres 26.4
1817 Female, age 42, unknown 25.7
1816 Male, age 51, unknown 25.5
2273 Male, age 74, both hemispheres 24.8
1815 Male, age 53, unknown 24.6
2825 Male, age 18, unknown 24.3
2316 Male, age 76, right hemisphere 22.3
Red nucleus
nTPM: 24.0
2823 Male, age 76, right hemisphere 28.3
1821 Female, age 72, unknown 27.4
1904 Male, age 53, unknown 25.7
1954 Female, age 42, unknown 24.8
1865 Male, age 51, unknown 24.5
2227 Male, age 72, unknown 24.2
2503 Female, age 72, unknown 23.0
2769 Male, age 72, unknown 23.0
2785 Male, age 18, unknown 22.6
2725 Female, age 75, unknown 21.8
2584 Male, age 75, left hemisphere 21.6
2588 Male, age 74, left hemisphere 21.0
Substantia nigra
nTPM: 26.5
2241 Male, age 72, unknown 33.3
1941 Male, age 53, unknown 29.1
1916 Female, age 42, unknown 28.8
1889 Female, age 72, unknown 28.2
1851 Male, age 51, unknown 27.1
2409 Female, age 72, unknown 25.2
2699 Male, age 18, unknown 24.7
2665 Male, age 74, both hemispheres 23.6
2590 Female, age 75, unknown 23.4
2583 Male, age 75, right hemisphere 22.1
Superior colliculus
nTPM: 23.5
1895 Male, age 76, right hemisphere 28.7
2087 Female, age 72, unknown 25.5
2668 Female, age 75, unknown 24.4
2261 Male, age 18, unknown 24.1
1839 Male, age 51, unknown 23.9
1913 Female, age 42, unknown 23.1
2587 Male, age 74, left hemisphere 22.0
2664 Male, age 75, both hemispheres 21.7
1796 Male, age 53, unknown 20.9
1995 Male, age 72, unknown 20.2
Ventral tegmental area
nTPM: 26.0
2223 Female, age 72, unknown 27.5
1915 Female, age 42, unknown 26.8
2218 Male, age 76, both hemispheres 26.7
1942 Male, age 51, unknown 25.1
2410 Female, age 72, unknown 25.0
2021 Male, age 53, unknown 24.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.0
Samples: 139

Max nTPM: 71.3
Min nTPM: 12.0
Std nTPM: 9.9
Median nTPM: 28.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 71.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 61.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 59.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 53.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 52.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 47.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 43.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.4
FF:10158-103A5 76 years, female 62.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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