BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:62.3 nTPM
HPA:62.3 nTPM
GTEx:75.7 nTPM
FANTOM5:74.9 Scaled Tags Per Million
Pig:3.9 nTPM
Mouse:23.1 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039571Antibody HPA039872
Glial cells Not detectedNot detected
Neuronal cells LowMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 58.9
2290 Female, age 72, unknown 62.0
1857 Female, age 85, left hemisphere 61.5
1854 Male, age 80, left hemisphere 60.2
1781 Male, age 74, unknown 59.7
2481 Female, age 94, left hemisphere 59.5
2289 Male, age 61, right hemisphere 57.5
2846 Female, age 79, unknown 55.5
2288 Male, age 75, left hemisphere 55.4
Claustrum
nTPM: 53.0
2491 Male, age 75, both hemispheres 58.7
2198 Male, age 80, both hemispheres 55.5
2292 Female, age 85, both hemispheres 53.2
2568 Male, age 61, both hemispheres 53.2
2196 Female, age 79, unknown 52.4
2284 Female, age 91, both hemispheres 52.2
2392 Female, age 94, both hemispheres 51.4
1956 Male, age 74, unknown 50.9
2645 Female, age 72, unknown 49.3
Globus pallidus, externus
nTPM: 61.3
1996 Male, age 80, right hemisphere 68.0
2772 Female, age 79, unknown 65.4
2646 Male, age 61, right hemisphere 60.6
2395 Male, age 75, both hemispheres 57.7
2567 Female, age 72, unknown 54.7
Globus pallidus, internus
nTPM: 62.3
2778 Female, age 91, both hemispheres 67.1
2483 Female, age 94, right hemisphere 64.7
2287 Male, age 75, right hemisphere 64.3
2037 Male, age 80, right hemisphere 62.7
2111 Female, age 85, right hemisphere 59.2
1818 Male, age 74, unknown 59.1
2566 Female, age 72, unknown 59.1
Nucleus accumbens
nTPM: 60.6
1783 Male, age 74, unknown 65.7
1806 Female, age 85, left hemisphere 64.7
1856 Female, age 91, right hemisphere 62.3
2824 Male, age 61, right hemisphere 60.6
2286 Male, age 75, left hemisphere 60.2
2391 Female, age 94, left hemisphere 57.8
2732 Male, age 80, right hemisphere 57.5
2698 Female, age 72, unknown 56.5
Nucleus basalis of Meynert
nTPM: 58.6
2569 Male, age 61, both hemispheres 67.1
2484 Female, age 94, left hemisphere 57.0
2393 Male, age 80, right hemisphere 56.1
2821 Male, age 75, both hemispheres 54.3
Nucleus of the diagonal band
nTPM: 55.1
1812 Female, age 91, both hemispheres 56.9
2775 Male, age 80, right hemisphere 56.4
1979 Male, age 74, unknown 55.0
2029 Male, age 61, right hemisphere 54.0
2195 Female, age 85, both hemispheres 52.9
Olfactory tubercle
nTPM: 52.2
1998 Female, age 91, both hemispheres 55.0
1846 Male, age 80, right hemisphere 52.7
2487 Female, age 94, left hemisphere 51.1
2856 Male, age 75, right hemisphere 50.0
Putamen
nTPM: 58.1
2466 Female, age 79, unknown 63.0
1937 Female, age 91, right hemisphere 60.3
1838 Male, age 80, right hemisphere 58.7
2647 Male, age 75, left hemisphere 57.7
2482 Female, age 94, left hemisphere 56.4
2489 Female, age 72, unknown 55.8
1829 Male, age 74, unknown 54.8
Septal nuclei
nTPM: 56.0
2031 Female, age 72, unknown 60.2
2059 Female, age 85, both hemispheres 59.5
1960 Male, age 74, unknown 58.4
2394 Male, age 61, left hemisphere 55.8
2009 Female, age 91, both hemispheres 55.3
2199 Male, age 80, right hemisphere 53.9
2629 Female, age 94, right hemisphere 48.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 75.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.5
Samples: 246

Max nTPM: 165.4
Min nTPM: 31.7
Std nTPM: 18.5
Median nTPM: 63.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 165.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 128.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 128.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 128.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 123.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 115.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 114.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 109.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 106.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 103.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 102.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 75.7
Samples: 246

Max nTPM: 264.9
Min nTPM: 31.4
Std nTPM: 24.6
Median nTPM: 70.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 264.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 152.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 149.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 144.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 136.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 136.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 130.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 126.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 125.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 124.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 123.5
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Brain - Putamen (basal ganglia)
Average nTPM: 72.9
Samples: 205

Max nTPM: 149.1
Min nTPM: 42.0
Std nTPM: 18.3
Median nTPM: 70.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 149.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 131.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 124.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 123.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 120.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 120.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 118.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 117.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 112.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 111.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 111.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.2
FF:10164-103B2 76 years, female 48.2
Globus pallidus
Scaled Tags Per Million: 74.9
FF:10175-103C4 60 years, female 112.0
FF:10161-103A8 76 years, female 37.7
Nucleus accumbens
Scaled Tags Per Million: 35.2
FF:10037-101F1 23-56 years, mixed 35.2
Putamen
Scaled Tags Per Million: 65.4
FF:10176-103C5 60 years, female 65.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Caudate
nTPM: 3.5
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.8
Sample A Female 3.8
Sample B Female 3.7
Sample C Male 3.5
Sample D Male 2.8
Putamen
nTPM: 3.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.1
Sample A Female 4.2
Sample B Female 3.1
Sample C Male 4.1
Sample D Male 3.7
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.3
Sample A Female 4.2
Sample B Female 3.3
Sample C Male 4.0
Sample D Male 4.0
Ventral pallidum
nTPM: 3.5
Samples: 4

Max nTPM: 3.7
Min nTPM: 3.3
Sample A Female 3.5
Sample B Female 3.7
Sample C Male 3.6
Sample D Male 3.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.6
Samples: 4

Max nTPM: 25.3
Min nTPM: 15.1
Sample A Male 17.4
Sample B Male 25.3
Sample C Female 16.7
Sample D Female 15.1
Septum
nTPM: 23.1
Samples: 4

Max nTPM: 27.7
Min nTPM: 19.8
Sample A Male 19.8
Sample B Male 22.8
Sample C Female 27.7
Sample D Female 21.9
Ventral forebrain
nTPM: 20.1
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.8
Sample A Male 17.8
Sample B Male 20.6
Sample C Female 24.0
Sample D Female 17.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68441580 Antisense, RP_041214_02_F04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
68441580 Antisense, RP_041214_02_F04, Mouse strain C57BL/6J (56 days, male) 0.0

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