BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.9 nTPM
HPA:14.9 nTPM
GTEx:13.7 nTPM
FANTOM5:178.1 Scaled Tags Per Million
Pig:43.6 nTPM
Mouse:175.6 nTPM
Allen mouse:17.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049627
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.6
2288 Male, age 75, left hemisphere 6.5
1857 Female, age 85, left hemisphere 5.1
1854 Male, age 80, left hemisphere 4.5
2290 Female, age 72, unknown 3.3
1781 Male, age 74, unknown 1.7
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 14.9
2491 Male, age 75, both hemispheres 25.6
2284 Female, age 91, both hemispheres 24.8
2568 Male, age 61, both hemispheres 23.9
2198 Male, age 80, both hemispheres 21.6
2392 Female, age 94, both hemispheres 13.3
1956 Male, age 74, unknown 12.8
2645 Female, age 72, unknown 9.6
2292 Female, age 85, both hemispheres 1.7
2196 Female, age 79, unknown 1.2
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 4.1
1856 Female, age 91, right hemisphere 20.5
2824 Male, age 61, right hemisphere 4.4
2286 Male, age 75, left hemisphere 3.6
1806 Female, age 85, left hemisphere 2.6
1783 Male, age 74, unknown 2.1
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.7
2393 Male, age 80, right hemisphere 3.1
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 6.2
1812 Female, age 91, both hemispheres 10.2
2029 Male, age 61, right hemisphere 8.6
2775 Male, age 80, right hemisphere 7.3
2195 Female, age 85, both hemispheres 4.8
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 12.9
1998 Female, age 91, both hemispheres 21.0
2856 Male, age 75, right hemisphere 12.8
2487 Female, age 94, left hemisphere 9.0
1846 Male, age 80, right hemisphere 8.8
Putamen
nTPM: 3.9
1937 Female, age 91, right hemisphere 12.8
1838 Male, age 80, right hemisphere 7.3
1829 Male, age 74, unknown 3.5
2466 Female, age 79, unknown 3.5
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 4.9
1960 Male, age 74, unknown 17.7
2031 Female, age 72, unknown 7.6
2009 Female, age 91, both hemispheres 5.4
2629 Female, age 94, right hemisphere 4.0
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.7
Samples: 246

Max nTPM: 41.7
Min nTPM: 0.6
Std nTPM: 9.0
Median nTPM: 13.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 41.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 38.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 36.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 33.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 33.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 33.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 32.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 32.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 31.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 31.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 31.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.9
Samples: 246

Max nTPM: 34.1
Min nTPM: 0.4
Std nTPM: 8.0
Median nTPM: 12.4
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 34.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 34.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 33.0
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 32.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 32.1
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 31.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 31.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 30.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 30.3
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 29.6
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 27.3
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Brain - Putamen (basal ganglia)
Average nTPM: 11.9
Samples: 205

Max nTPM: 34.6
Min nTPM: 0.4
Std nTPM: 8.1
Median nTPM: 10.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 34.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 34.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 33.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 33.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 31.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 30.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 29.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 27.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 27.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 26.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 26.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 178.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 132.7
FF:10164-103B2 76 years, female 132.7
Globus pallidus
Scaled Tags Per Million: 54.7
FF:10175-103C4 60 years, female 91.5
FF:10161-103A8 76 years, female 17.8
Nucleus accumbens
Scaled Tags Per Million: 178.1
FF:10037-101F1 23-56 years, mixed 178.1
Putamen
Scaled Tags Per Million: 135.0
FF:10176-103C5 60 years, female 135.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 43.6
Pig sample Sample description nTPM
Caudate
nTPM: 39.0
Samples: 4

Max nTPM: 50.6
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 36.1
Sample C Male 50.6
Sample D Male 47.9
Putamen
nTPM: 43.6
Samples: 4

Max nTPM: 75.0
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 37.2
Sample C Male 75.0
Sample D Male 48.9
Septum
nTPM: 28.7
Samples: 4

Max nTPM: 53.8
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 22.6
Sample C Male 23.9
Sample D Male 53.8
Ventral pallidum
nTPM: 21.5
Samples: 4

Max nTPM: 24.1
Min nTPM: 18.9
Sample A Female 19.2
Sample B Female 24.1
Sample C Male 23.6
Sample D Male 18.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 175.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 175.6
Samples: 4

Max nTPM: 188.3
Min nTPM: 167.3
Sample A Male 188.3
Sample B Male 178.9
Sample C Female 167.3
Sample D Female 167.8
Septum
nTPM: 102.4
Samples: 4

Max nTPM: 114.1
Min nTPM: 81.8
Sample A Male 111.9
Sample B Male 101.7
Sample C Female 114.1
Sample D Female 81.8
Ventral forebrain
nTPM: 137.1
Samples: 4

Max nTPM: 146.1
Min nTPM: 132.8
Sample A Male 133.5
Sample B Male 132.8
Sample C Female 146.1
Sample D Female 135.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 17.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 17.9
72080025 Antisense, RP_051017_03_B11, Mouse strain C57BL/6J (56 days, male) 20.3
68919824 Antisense, RP_050301_02_F02, Mouse strain C57BL/6J (56 days, male) 15.5
Pallidum
Expression energy: 7.3
72080025 Antisense, RP_051017_03_B11, Mouse strain C57BL/6J (56 days, male) 7.8
68919824 Antisense, RP_050301_02_F02, Mouse strain C57BL/6J (56 days, male) 6.8

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.