BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1.2 nTPM
HPA:1.2 nTPM
GTEx:2.2 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:0.8 nTPM
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.9
2288 Male, age 75, left hemisphere 1.4
2289 Male, age 61, right hemisphere 1.1
2290 Female, age 72, unknown 1.1
2481 Female, age 94, left hemisphere 1.1
1781 Male, age 74, unknown 0.9
1854 Male, age 80, left hemisphere 0.7
2846 Female, age 79, unknown 0.6
1857 Female, age 85, left hemisphere 0.5
Claustrum
nTPM: 0.9
2568 Male, age 61, both hemispheres 1.3
2284 Female, age 91, both hemispheres 1.1
2645 Female, age 72, unknown 1.1
2491 Male, age 75, both hemispheres 1.0
2198 Male, age 80, both hemispheres 0.9
2392 Female, age 94, both hemispheres 0.9
1956 Male, age 74, unknown 0.8
2292 Female, age 85, both hemispheres 0.7
2196 Female, age 79, unknown 0.6
Globus pallidus, externus
nTPM: 1.1
2772 Female, age 79, unknown 1.3
1996 Male, age 80, right hemisphere 1.2
2567 Female, age 72, unknown 1.1
2646 Male, age 61, right hemisphere 1.1
2395 Male, age 75, both hemispheres 0.9
Globus pallidus, internus
nTPM: 1.1
1818 Male, age 74, unknown 1.4
2037 Male, age 80, right hemisphere 1.4
2287 Male, age 75, right hemisphere 1.2
2483 Female, age 94, right hemisphere 1.1
2566 Female, age 72, unknown 0.9
2111 Female, age 85, right hemisphere 0.8
2778 Female, age 91, both hemispheres 0.8
Nucleus accumbens
nTPM: 0.9
2286 Male, age 75, left hemisphere 1.2
2391 Female, age 94, left hemisphere 1.1
2824 Male, age 61, right hemisphere 1.0
2698 Female, age 72, unknown 0.9
1856 Female, age 91, right hemisphere 0.8
2732 Male, age 80, right hemisphere 0.8
1783 Male, age 74, unknown 0.7
1806 Female, age 85, left hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 1.2
2821 Male, age 75, both hemispheres 1.5
2484 Female, age 94, left hemisphere 1.4
2569 Male, age 61, both hemispheres 1.1
2393 Male, age 80, right hemisphere 0.8
Nucleus of the diagonal band
nTPM: 1.0
2029 Male, age 61, right hemisphere 1.1
2195 Female, age 85, both hemispheres 1.1
2775 Male, age 80, right hemisphere 0.9
1812 Female, age 91, both hemispheres 0.8
1979 Male, age 74, unknown 0.8
Olfactory tubercle
nTPM: 1.0
1998 Female, age 91, both hemispheres 1.1
2487 Female, age 94, left hemisphere 1.1
1846 Male, age 80, right hemisphere 0.8
2856 Male, age 75, right hemisphere 0.8
Putamen
nTPM: 0.9
2489 Female, age 72, unknown 1.3
2647 Male, age 75, left hemisphere 1.2
2482 Female, age 94, left hemisphere 1.1
2466 Female, age 79, unknown 0.9
1829 Male, age 74, unknown 0.8
1937 Female, age 91, right hemisphere 0.6
1838 Male, age 80, right hemisphere 0.5
Septal nuclei
nTPM: 1.0
2394 Male, age 61, left hemisphere 1.3
1960 Male, age 74, unknown 1.1
2059 Female, age 85, both hemispheres 1.1
2009 Female, age 91, both hemispheres 0.9
2031 Female, age 72, unknown 0.9
2199 Male, age 80, right hemisphere 0.9
2629 Female, age 94, right hemisphere 0.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.6
Samples: 246

Max nTPM: 5.2
Min nTPM: 0.3
Std nTPM: 0.8
Median nTPM: 1.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 5.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 5.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 5.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 4.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 4.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 3.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 3.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 3.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 3.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 6.6
Min nTPM: 0.1
Std nTPM: 0.7
Median nTPM: 0.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 6.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 5.9
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 5.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 3.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 3.3
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 2.4
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 2.4
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 2.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 2.3
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 2.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 2.2
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Brain - Putamen (basal ganglia)
Average nTPM: 2.2
Samples: 205

Max nTPM: 7.8
Min nTPM: 0.2
Std nTPM: 1.1
Median nTPM: 1.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 7.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 5.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 5.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 5.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 5.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 5.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 4.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 4.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 4.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 4.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 4.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.7
FF:10164-103B2 76 years, female 0.7
Globus pallidus
Scaled Tags Per Million: 1.3
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 0.3
Nucleus accumbens
Scaled Tags Per Million: 1.2
FF:10037-101F1 23-56 years, mixed 1.2
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.8
Pig sample Sample description nTPM
Caudate
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 0.7
Sample C Male 0.8
Sample D Male 0.8
Putamen
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.7
Sample B Female 0.5
Sample C Male 0.9
Sample D Male 0.9
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.6
Sample C Male 0.9
Sample D Male 0.5
Ventral pallidum
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.6
Sample B Female 0.8
Sample C Male 0.7
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.0
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.1
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
632503 Antisense, RP_040907_01_E11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
632503 Antisense, RP_040907_01_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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