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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:199.1 nTPM
HPA:199.1 nTPM
GTEx:270.1 nTPM
FANTOM5:428.8 Scaled Tags Per Million
Pig:127.6 nTPM
Mouse:817.1 nTPM
Allen mouse:1.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 199.1
Sample id Sample description nTPM
Amygdala
nTPM: 179.7
2695 Female, age 67, right hemisphere 195.3
2517 Female, age 94, left hemisphere 191.9
1987 Female, age 91, left hemisphere 187.9
2514 Male, age 75, right hemisphere 179.8
2814 Male, age 76, right hemisphere 143.7
Basal amygdala
nTPM: 199.1
2609 Male, age 75, right hemisphere 227.2
2685 Female, age 94, left hemisphere 211.7
2827 Female, age 67, right hemisphere 198.2
2243 Female, age 91, right hemisphere 197.4
2110 Male, age 80, left hemisphere 196.1
1955 Male, age 76, both hemispheres 164.0
Central amygdala
nTPM: 187.2
2826 Female, age 94, left hemisphere 213.7
2515 Male, age 75, right hemisphere 208.6
2701 Female, age 91, right hemisphere 187.1
2239 Male, age 80, left hemisphere 186.5
1905 Male, age 76, both hemispheres 140.2
Corticomedial amygdala
nTPM: 192.6
2829 Male, age 80, left hemisphere 219.5
2535 Female, age 67, right hemisphere 204.1
2428 Male, age 75, right hemisphere 201.7
2242 Female, age 91, right hemisphere 183.8
2429 Female, age 94, left hemisphere 180.7
2240 Male, age 76, both hemispheres 165.9
Lateral amygdala
nTPM: 191.5
2516 Male, age 75, right hemisphere 208.2
2534 Female, age 94, left hemisphere 199.0
2255 Female, age 91, right hemisphere 197.7
2256 Male, age 80, left hemisphere 194.4
2830 Female, age 67, right hemisphere 191.9
1883 Male, age 76, both hemispheres 157.5
Stria terminalis, bed nucleus
nTPM: 176.9
1974 Female, age 91, both hemispheres 183.4
2486 Female, age 94, both hemispheres 182.4
2201 Male, age 74, unknown 164.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 270.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 270.1
Samples: 152

Max nTPM: 543.3
Min nTPM: 22.4
Std nTPM: 74.1
Median nTPM: 261.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 543.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 537.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 459.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 414.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 403.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 401.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 397.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 396.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 392.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 386.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 383.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 368.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 363.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 362.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 360.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 357.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 353.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 350.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 348.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 348.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 348.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 347.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 345.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 343.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 343.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 342.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 341.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 338.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 337.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 335.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 331.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 331.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 321.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 315.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 311.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 309.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 309.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 308.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 307.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 307.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 306.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 304.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 302.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 299.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 299.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 298.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 297.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 296.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 295.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 294.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 293.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 293.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 292.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 291.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 287.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 286.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 286.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 286.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 284.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 284.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 282.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 282.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 280.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 279.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 279.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 276.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 274.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 272.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 272.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 269.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 266.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 266.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 265.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 264.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 263.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 261.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 261.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 261.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 260.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 260.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 259.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 259.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 259.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 258.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 258.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 257.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 256.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 254.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 253.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 253.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 251.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 250.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 250.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 247.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 247.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 246.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 246.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 243.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 242.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 242.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 242.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 239.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 239.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 238.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 238.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 236.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 236.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 234.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 234.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 229.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 228.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 227.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 225.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 222.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 221.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 220.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 218.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 216.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 214.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 209.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 208.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 208.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 207.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 203.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 202.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 201.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 199.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 199.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 199.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 198.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 198.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 197.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 193.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 193.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 191.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 191.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 189.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 188.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 184.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 182.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 182.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 179.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 177.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 166.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 165.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 161.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 145.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 134.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 133.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 124.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 118.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 428.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 428.8
FF:10151-102I7 76 years, female 428.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 127.6
Pig sample Sample description nTPM
Amygdala
nTPM: 127.6
Samples: 4

Max nTPM: 172.0
Min nTPM: 100.3
Sample A Female 172.0
Sample B Female 100.3
Sample C Male 117.9
Sample D Male 120.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 817.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 817.1
Samples: 4

Max nTPM: 854.4
Min nTPM: 760.1
Sample A Male 831.0
Sample B Male 854.4
Sample C Female 760.1
Sample D Female 822.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.6
79904620 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 1.6
79912542 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 1.5

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