MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA:27.9 nTPM
GTEx:32.1 nTPM
FANTOM5:62.4 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:21.5 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
1827 Male, age 72, unknown 27.4
2586 Male, age 75, left hemisphere 27.0
2019 Male, age 18, unknown 26.8
2411 Female, age 72, unknown 26.5
2666 Male, age 74, left hemisphere 26.4
1870 Female, age 42, unknown 26.3
1833 Male, age 53, unknown 25.3
2219 Male, age 76, both hemispheres 25.1
1830 Male, age 51, unknown 24.7
2828 Female, age 72, unknown 24.5
Dorsal raphe nucleus
nTPM: 25.7
2298 Female, age 72, unknown 27.0
2047 Male, age 72, unknown 26.0
1828 Male, age 53, unknown 25.7
2750 Male, age 76, both hemispheres 25.2
2016 Female, age 72, unknown 24.7
Inferior colliculus
nTPM: 26.8
2097 Female, age 72, unknown 29.2
1890 Male, age 53, unknown 26.6
1848 Female, age 42, unknown 25.9
2849 Male, age 72, unknown 25.3
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Pedunculopontine tegmental nucleus
nTPM: 26.8
2338 Male, age 61, both hemispheres 28.1
2334 Male, age 80, both hemispheres 26.6
1921 Female, age 85, both hemispheres 25.7
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 27.6
1947 Male, age 18, unknown 27.1
1795 Male, age 51, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 25.1
1840 Male, age 53, unknown 26.1
2850 Male, age 76, both hemispheres 24.9
1831 Male, age 72, unknown 24.8
2464 Female, age 72, unknown 24.7
Periaquaductal grey, lateral
nTPM: 25.6
2272 Male, age 74, both hemispheres 26.9
2053 Male, age 18, unknown 25.5
2140 Male, age 76, both hemispheres 24.5
Pretectal area
nTPM: 27.3
1816 Male, age 51, unknown 30.6
1817 Female, age 42, unknown 30.0
2007 Male, age 72, unknown 29.7
1944 Female, age 72, unknown 29.5
1815 Male, age 53, unknown 28.2
2273 Male, age 74, both hemispheres 26.3
2667 Female, age 75, unknown 25.9
2224 Female, age 72, unknown 25.8
2825 Male, age 18, unknown 25.5
2316 Male, age 76, right hemisphere 24.8
2407 Male, age 75, both hemispheres 24.4
Red nucleus
nTPM: 26.0
1821 Female, age 72, unknown 29.5
2503 Female, age 72, unknown 26.9
2725 Female, age 75, unknown 26.9
2785 Male, age 18, unknown 26.9
1954 Female, age 42, unknown 26.4
1865 Male, age 51, unknown 25.6
1904 Male, age 53, unknown 25.4
2823 Male, age 76, right hemisphere 25.2
2588 Male, age 74, left hemisphere 25.1
2769 Male, age 72, unknown 25.1
2227 Male, age 72, unknown 24.8
2584 Male, age 75, left hemisphere 24.6
Substantia nigra
nTPM: 27.9
1916 Female, age 42, unknown 29.7
1889 Female, age 72, unknown 29.2
2241 Male, age 72, unknown 29.0
2409 Female, age 72, unknown 28.7
1851 Male, age 51, unknown 28.4
2590 Female, age 75, unknown 27.8
1941 Male, age 53, unknown 27.4
2699 Male, age 18, unknown 26.8
2665 Male, age 74, both hemispheres 26.3
2583 Male, age 75, right hemisphere 25.2
Superior colliculus
nTPM: 26.3
2087 Female, age 72, unknown 27.2
2261 Male, age 18, unknown 27.1
1796 Male, age 53, unknown 26.9
2587 Male, age 74, left hemisphere 26.4
1895 Male, age 76, right hemisphere 26.1
2668 Female, age 75, unknown 26.1
1839 Male, age 51, unknown 25.9
2664 Male, age 75, both hemispheres 25.9
1913 Female, age 42, unknown 25.8
1995 Male, age 72, unknown 25.4
Ventral tegmental area
nTPM: 26.8
2410 Female, age 72, unknown 28.2
1915 Female, age 42, unknown 27.5
2218 Male, age 76, both hemispheres 27.0
2223 Female, age 72, unknown 26.2
1942 Male, age 51, unknown 25.9
2021 Male, age 53, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 139

Max nTPM: 52.0
Min nTPM: 21.4
Std nTPM: 5.5
Median nTPM: 31.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 52.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 46.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 44.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 42.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 41.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 41.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 41.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 40.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 40.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.4
FF:10158-103A5 76 years, female 62.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.0
Pig sample Sample description nTPM
Midbrain
nTPM: 39.5
Samples: 4

Max nTPM: 46.0
Min nTPM: 31.9
Sample A Female 36.8
Sample B Female 31.9
Sample C Male 46.0
Sample D Male 43.1
Periaqueductal gray
nTPM: 29.8
Samples: 3

Max nTPM: 35.2
Min nTPM: 25.5
Sample B Female 28.6
Sample C Male 35.2
Sample D Male 25.5
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 39.3
Min nTPM: 28.3
Sample A Female 39.3
Sample B Female 30.5
Sample C Male 39.3
Sample D Male 28.3
Superior colliculi
nTPM: 44.1
Samples: 4

Max nTPM: 49.0
Min nTPM: 39.5
Sample A Female 47.7
Sample B Female 39.5
Sample C Male 49.0
Sample D Male 40.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 27.6
Min nTPM: 12.2
Sample A Male 27.1
Sample B Male 19.1
Sample C Female 12.2
Sample D Female 27.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70429172 Antisense, RP_050614_01_B07, Mouse strain C57BL/6J (56 days, male) 6.9
70919687 Antisense, RP_050713_01_H05, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.