HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:103.3 nTPM
HPA:103.3 nTPM
GTEx:90.1 nTPM
FANTOM5:273.3 Scaled Tags Per Million
Pig:195.5 nTPM
Mouse:327.6 nTPM
Allen mouse:16.5 Expression energy

HIPPOCAMPUS - Extended tissue profilei , antibody HPA054560
Glial cells Not detected
Neuronal cells High
Neuronal projections Low
Synapses Medium

HIPPOCAMPUS - Antibody stainingi
Antibody HPA054560
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 103.3
Sample id Sample description nTPM
Hippocampus
nTPM: 75.2
2621 Female, age 67, right hemisphere 98.6
1898 Male, age 80, left hemisphere 93.9
1855 Male, age 76, left hemisphere 87.5
1911 Female, age 85, right hemisphere 68.1
2148 Female, age 91, left hemisphere 59.6
2529 Female, age 94, left hemisphere 43.6
Dentate gyrus
nTPM: 74.5
1927 Female, age 91, both hemispheres 118.9
2530 Female, age 94, left hemisphere 98.2
2246 Female, age 85, both hemispheres 73.0
2010 Male, age 76, both hemispheres 60.8
2531 Female, age 67, both hemispheres 49.3
2528 Male, age 74, both hemispheres 46.9
Entorhinal gyrus
nTPM: 49.1
2613 Female, age 94, left hemisphere 112.8
1938 Female, age 85, left hemisphere 54.5
1787 Male, age 76, left hemisphere 45.5
2764 Male, age 80, right hemisphere 45.3
2686 Male, age 75, right hemisphere 21.7
2117 Female, age 91, right hemisphere 15.1
Hippocampus, CA1
nTPM: 103.3
2749 Male, age 80, left hemisphere 214.3
1873 Female, age 85, both hemispheres 95.7
2527 Male, age 74, both hemispheres 86.0
2082 Female, age 91, right hemisphere 77.9
2045 Male, age 76, both hemispheres 42.6
Hippocampus, CA2
nTPM: 78.1
1963 Male, age 80, left hemisphere 104.1
1892 Male, age 76, both hemispheres 97.5
2437 Female, age 94, left hemisphere 78.2
2249 Male, age 74, both hemispheres 70.5
2113 Female, age 91, right hemisphere 68.2
1940 Female, age 85, left hemisphere 50.2
Hippocampus, CA3
nTPM: 86.3
2137 Male, age 80, left hemisphere 203.6
2861 Female, age 67, both hemispheres 81.1
2436 Male, age 74, both hemispheres 72.7
2620 Female, age 94, left hemisphere 66.1
1867 Male, age 76, both hemispheres 56.7
1891 Female, age 85, both hemispheres 37.4
Parahippocampal cortex
nTPM: 52.4
2245 Female, age 91, both hemispheres 121.8
2250 Female, age 67, right hemisphere 83.6
1933 Female, age 85, both hemispheres 56.7
1990 Female, age 91, right hemisphere 50.6
2693 Female, age 94, both hemispheres 48.1
2018 Male, age 76, both hemispheres 43.4
1850 Male, age 80, both hemispheres 35.7
2532 Female, age 72, left hemisphere 30.0
2622 Female, age 67, right hemisphere 28.9
2692 Male, age 74, both hemispheres 24.8
Perirhinal gyrus
nTPM: 66.1
1847 Female, age 91, left hemisphere 121.4
2521 Female, age 94, right hemisphere 101.6
1794 Male, age 80, right hemisphere 44.3
1841 Female, age 85, right hemisphere 38.8
2848 Male, age 76, right hemisphere 24.2
Subiculum
nTPM: 50.9
1901 Male, age 80, both hemispheres 86.6
1977 Female, age 85, both hemispheres 60.4
2042 Male, age 76, both hemispheres 54.8
2438 Female, age 94, left hemisphere 53.3
2619 Male, age 74, both hemispheres 31.7
2729 Female, age 91, right hemisphere 18.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 90.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 90.1
Samples: 197

Max nTPM: 341.6
Min nTPM: 0.9
Std nTPM: 74.5
Median nTPM: 71.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 341.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 331.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 310.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 307.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 301.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 288.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 283.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 274.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 271.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 266.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 240.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 273.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 273.3
FF:10169-103B7 60 years, female 410.1
FF:10153-102I9 76 years, female 136.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 195.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 195.5
Samples: 4

Max nTPM: 286.8
Min nTPM: 128.5
Sample A Female 286.8
Sample B Female 216.7
Sample C Male 149.8
Sample D Male 128.5
Entorhinal cortex
nTPM: 95.0
Samples: 4

Max nTPM: 114.2
Min nTPM: 70.0
Sample A Female 109.4
Sample B Female 70.0
Sample C Male 114.2
Sample D Male 86.3
Subiculum
nTPM: 131.8
Samples: 4

Max nTPM: 166.8
Min nTPM: 99.2
Sample A Female 166.8
Sample B Female 116.1
Sample C Male 145.0
Sample D Male 99.2
Ventral hippocampus
nTPM: 167.9
Samples: 4

Max nTPM: 304.5
Min nTPM: 91.0
Sample A Female 135.0
Sample B Female 91.0
Sample C Male 140.9
Sample D Male 304.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 327.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 203.4
Samples: 4

Max nTPM: 267.6
Min nTPM: 155.7
Sample A Male 175.7
Sample B Male 155.7
Sample C Female 214.6
Sample D Female 267.6
Hippocampal formation
nTPM: 327.6
Samples: 4

Max nTPM: 395.0
Min nTPM: 267.4
Sample A Male 267.4
Sample B Male 364.6
Sample C Female 395.0
Sample D Female 283.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.5
73521814 Antisense, RP_051101_03_A12, Mouse strain C57BL/6J (56 days, male) 17.4
69817306 Antisense, RP_050510_03_B01, Mouse strain C57BL/6J (56 days, male) 15.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.