BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:4.1 nTPM
HPA:4.1 nTPM
GTEx:8.7 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:5.4 nTPM
Allen mouse:0.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.4
2290 Female, age 72, unknown 2.9
2289 Male, age 61, right hemisphere 2.7
2481 Female, age 94, left hemisphere 2.7
1854 Male, age 80, left hemisphere 2.6
1781 Male, age 74, unknown 2.4
1857 Female, age 85, left hemisphere 2.4
2846 Female, age 79, unknown 1.9
2288 Male, age 75, left hemisphere 1.4
Claustrum
nTPM: 2.4
2645 Female, age 72, unknown 3.5
2568 Male, age 61, both hemispheres 3.2
2284 Female, age 91, both hemispheres 2.8
2196 Female, age 79, unknown 2.4
2491 Male, age 75, both hemispheres 2.4
2292 Female, age 85, both hemispheres 2.2
2198 Male, age 80, both hemispheres 1.9
1956 Male, age 74, unknown 1.7
2392 Female, age 94, both hemispheres 1.5
Globus pallidus, externus
nTPM: 4.1
1996 Male, age 80, right hemisphere 5.3
2567 Female, age 72, unknown 5.3
2646 Male, age 61, right hemisphere 4.8
2772 Female, age 79, unknown 3.1
2395 Male, age 75, both hemispheres 1.9
Globus pallidus, internus
nTPM: 3.2
2566 Female, age 72, unknown 5.1
2037 Male, age 80, right hemisphere 4.2
2483 Female, age 94, right hemisphere 3.1
1818 Male, age 74, unknown 2.9
2111 Female, age 85, right hemisphere 2.5
2778 Female, age 91, both hemispheres 2.3
2287 Male, age 75, right hemisphere 2.1
Nucleus accumbens
nTPM: 2.0
2732 Male, age 80, right hemisphere 2.9
1806 Female, age 85, left hemisphere 2.7
1783 Male, age 74, unknown 2.1
2698 Female, age 72, unknown 2.0
2824 Male, age 61, right hemisphere 2.0
2391 Female, age 94, left hemisphere 1.5
2286 Male, age 75, left hemisphere 1.4
1856 Female, age 91, right hemisphere 1.3
Nucleus basalis of Meynert
nTPM: 3.4
2569 Male, age 61, both hemispheres 7.1
2484 Female, age 94, left hemisphere 2.3
2821 Male, age 75, both hemispheres 2.2
2393 Male, age 80, right hemisphere 1.8
Nucleus of the diagonal band
nTPM: 2.3
1979 Male, age 74, unknown 3.7
2029 Male, age 61, right hemisphere 2.3
2775 Male, age 80, right hemisphere 2.2
2195 Female, age 85, both hemispheres 1.8
1812 Female, age 91, both hemispheres 1.5
Olfactory tubercle
nTPM: 2.1
2856 Male, age 75, right hemisphere 2.9
1998 Female, age 91, both hemispheres 2.0
1846 Male, age 80, right hemisphere 1.8
2487 Female, age 94, left hemisphere 1.7
Putamen
nTPM: 2.2
2489 Female, age 72, unknown 3.1
2647 Male, age 75, left hemisphere 3.0
1829 Male, age 74, unknown 2.6
2466 Female, age 79, unknown 1.8
2482 Female, age 94, left hemisphere 1.8
1937 Female, age 91, right hemisphere 1.6
1838 Male, age 80, right hemisphere 1.3
Septal nuclei
nTPM: 2.6
2199 Male, age 80, right hemisphere 3.6
2394 Male, age 61, left hemisphere 3.4
2059 Female, age 85, both hemispheres 3.2
2031 Female, age 72, unknown 2.4
1960 Male, age 74, unknown 2.2
2009 Female, age 91, both hemispheres 1.8
2629 Female, age 94, right hemisphere 1.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.7
Samples: 246

Max nTPM: 25.7
Min nTPM: 1.4
Std nTPM: 4.0
Median nTPM: 7.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 25.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 25.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 21.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 20.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 20.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 19.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 19.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 18.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 18.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 17.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 17.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.0
Samples: 246

Max nTPM: 29.2
Min nTPM: 2.3
Std nTPM: 3.8
Median nTPM: 6.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 29.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 22.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 20.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 18.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 17.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 17.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 16.7
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 16.7
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 16.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 16.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 16.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 8.7
Samples: 205

Max nTPM: 21.4
Min nTPM: 1.7
Std nTPM: 4.0
Median nTPM: 7.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 21.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 21.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 19.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 19.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 19.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 18.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 18.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 18.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 17.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 17.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 17.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.8
FF:10164-103B2 76 years, female 11.8
Globus pallidus
Scaled Tags Per Million: 19.6
FF:10175-103C4 60 years, female 24.4
FF:10161-103A8 76 years, female 14.8
Nucleus accumbens
Scaled Tags Per Million: 8.2
FF:10037-101F1 23-56 years, mixed 8.2
Putamen
Scaled Tags Per Million: 12.6
FF:10176-103C5 60 years, female 12.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.4
Pig sample Sample description nTPM
Caudate
nTPM: 7.5
Samples: 4

Max nTPM: 8.8
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 7.5
Sample C Male 8.8
Sample D Male 7.8
Putamen
nTPM: 6.4
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 5.8
Sample C Male 6.0
Sample D Male 8.2
Septum
nTPM: 6.2
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 6.1
Sample C Male 6.1
Sample D Male 6.7
Ventral pallidum
nTPM: 6.4
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 6.3
Sample C Male 8.0
Sample D Male 6.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.1
Samples: 4

Max nTPM: 7.7
Min nTPM: 3.9
Sample A Male 4.1
Sample B Male 4.5
Sample C Female 3.9
Sample D Female 7.7
Septum
nTPM: 4.7
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.4
Sample A Male 5.0
Sample B Male 4.4
Sample C Female 4.6
Sample D Female 4.6
Ventral forebrain
nTPM: 5.4
Samples: 4

Max nTPM: 5.5
Min nTPM: 5.1
Sample A Male 5.4
Sample B Male 5.1
Sample C Female 5.5
Sample D Female 5.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
68410470 Antisense, RP_041214_02_A01, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.7
68410470 Antisense, RP_041214_02_A01, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.