MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:82.5 nTPM
HPA:82.5 nTPM
GTEx:91.2 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:7.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.6
2666 Male, age 74, left hemisphere 83.2
2019 Male, age 18, unknown 82.5
2411 Female, age 72, unknown 82.4
1870 Female, age 42, unknown 81.9
2828 Female, age 72, unknown 81.1
1833 Male, age 53, unknown 79.9
1830 Male, age 51, unknown 79.6
1827 Male, age 72, unknown 79.3
2219 Male, age 76, both hemispheres 78.8
2586 Male, age 75, left hemisphere 77.1
Dorsal raphe nucleus
nTPM: 82.1
2298 Female, age 72, unknown 86.8
2750 Male, age 76, both hemispheres 82.7
1828 Male, age 53, unknown 81.0
2016 Female, age 72, unknown 80.0
2047 Male, age 72, unknown 79.9
Inferior colliculus
nTPM: 79.2
1890 Male, age 53, unknown 80.4
2097 Female, age 72, unknown 80.3
1848 Female, age 42, unknown 78.0
2849 Male, age 72, unknown 78.0
Median raphe nucleus
nTPM: 80.8
2220 Male, age 76, midline 80.8
Pedunculopontine tegmental nucleus
nTPM: 82.3
2338 Male, age 61, both hemispheres 84.1
2334 Male, age 80, both hemispheres 83.3
1921 Female, age 85, both hemispheres 79.6
Periaquaductal grey, anterior
nTPM: 79.7
2502 Female, age 75, unknown 80.9
1947 Male, age 18, unknown 79.6
1795 Male, age 51, unknown 78.6
Periaquaductal grey, dorsal
nTPM: 78.2
2850 Male, age 76, both hemispheres 78.8
2464 Female, age 72, unknown 78.4
1840 Male, age 53, unknown 78.1
1831 Male, age 72, unknown 77.5
Periaquaductal grey, lateral
nTPM: 79.3
2053 Male, age 18, unknown 80.0
2272 Male, age 74, both hemispheres 79.7
2140 Male, age 76, both hemispheres 78.2
Pretectal area
nTPM: 80.1
2007 Male, age 72, unknown 82.1
2273 Male, age 74, both hemispheres 81.3
1816 Male, age 51, unknown 80.9
2316 Male, age 76, right hemisphere 80.7
1815 Male, age 53, unknown 80.1
1817 Female, age 42, unknown 80.1
2667 Female, age 75, unknown 80.1
1944 Female, age 72, unknown 79.8
2224 Female, age 72, unknown 79.5
2825 Male, age 18, unknown 79.1
2407 Male, age 75, both hemispheres 77.7
Red nucleus
nTPM: 82.5
1821 Female, age 72, unknown 86.1
1865 Male, age 51, unknown 84.4
2503 Female, age 72, unknown 84.4
1954 Female, age 42, unknown 83.3
1904 Male, age 53, unknown 82.9
2725 Female, age 75, unknown 82.5
2769 Male, age 72, unknown 81.9
2227 Male, age 72, unknown 81.8
2823 Male, age 76, right hemisphere 81.6
2785 Male, age 18, unknown 81.5
2588 Male, age 74, left hemisphere 81.2
2584 Male, age 75, left hemisphere 78.6
Substantia nigra
nTPM: 81.3
1851 Male, age 51, unknown 83.8
2241 Male, age 72, unknown 82.8
1941 Male, age 53, unknown 82.3
2699 Male, age 18, unknown 82.2
1889 Female, age 72, unknown 80.9
1916 Female, age 42, unknown 80.9
2409 Female, age 72, unknown 80.9
2665 Male, age 74, both hemispheres 80.8
2590 Female, age 75, unknown 80.0
2583 Male, age 75, right hemisphere 78.0
Superior colliculus
nTPM: 80.5
1913 Female, age 42, unknown 83.5
1995 Male, age 72, unknown 83.3
2587 Male, age 74, left hemisphere 83.3
1839 Male, age 51, unknown 80.4
1796 Male, age 53, unknown 80.2
2668 Female, age 75, unknown 80.2
1895 Male, age 76, right hemisphere 79.6
2261 Male, age 18, unknown 78.8
2087 Female, age 72, unknown 78.2
2664 Male, age 75, both hemispheres 77.3
Ventral tegmental area
nTPM: 81.6
2223 Female, age 72, unknown 84.3
2410 Female, age 72, unknown 83.1
1915 Female, age 42, unknown 82.7
2021 Male, age 53, unknown 80.5
2218 Male, age 76, both hemispheres 80.5
1942 Male, age 51, unknown 78.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.2
Samples: 139

Max nTPM: 235.1
Min nTPM: 44.0
Std nTPM: 29.6
Median nTPM: 85.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 235.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 208.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 199.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 150.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 149.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 148.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 141.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 141.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 141.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 140.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 134.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.7
Pig sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 11.4
Min nTPM: 7.9
Sample A Female 11.4
Sample B Female 8.2
Sample C Male 8.8
Sample D Male 7.9
Periaqueductal gray
nTPM: 7.1
Samples: 3

Max nTPM: 7.4
Min nTPM: 6.6
Sample B Female 7.3
Sample C Male 7.4
Sample D Male 6.6
Substantia nigra
nTPM: 9.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 7.4
Sample A Female 13.1
Sample B Female 9.6
Sample C Male 8.9
Sample D Male 7.4
Superior colliculi
nTPM: 9.6
Samples: 4

Max nTPM: 10.7
Min nTPM: 7.7
Sample A Female 10.2
Sample B Female 9.6
Sample C Male 10.7
Sample D Male 7.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.5
Sample A Male 9.4
Sample B Male 6.0
Sample C Female 8.2
Sample D Female 5.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75198160 Antisense, RP_060502_02_A11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.