BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:86.4 nTPM
HPA:86.4 nTPM
GTEx:60.1 nTPM
FANTOM5:115.0 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA042842Antibody CAB034278
Glial cells Not detectedLow
Neuronal cells Not detectedLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 86.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.3
1781 Male, age 74, unknown 48.1
2288 Male, age 75, left hemisphere 39.9
1857 Female, age 85, left hemisphere 37.6
2289 Male, age 61, right hemisphere 35.0
2290 Female, age 72, unknown 33.9
1854 Male, age 80, left hemisphere 31.9
2846 Female, age 79, unknown 28.8
2481 Female, age 94, left hemisphere 27.2
Claustrum
nTPM: 71.7
2284 Female, age 91, both hemispheres 96.9
2491 Male, age 75, both hemispheres 94.6
2568 Male, age 61, both hemispheres 90.7
2645 Female, age 72, unknown 80.8
2198 Male, age 80, both hemispheres 75.8
2392 Female, age 94, both hemispheres 64.0
1956 Male, age 74, unknown 54.6
2292 Female, age 85, both hemispheres 50.9
2196 Female, age 79, unknown 37.3
Globus pallidus, externus
nTPM: 22.0
2772 Female, age 79, unknown 26.1
2646 Male, age 61, right hemisphere 25.4
2567 Female, age 72, unknown 22.6
1996 Male, age 80, right hemisphere 19.4
2395 Male, age 75, both hemispheres 16.3
Globus pallidus, internus
nTPM: 20.0
1818 Male, age 74, unknown 29.3
2566 Female, age 72, unknown 29.3
2483 Female, age 94, right hemisphere 21.4
2037 Male, age 80, right hemisphere 19.5
2111 Female, age 85, right hemisphere 16.1
2778 Female, age 91, both hemispheres 12.5
2287 Male, age 75, right hemisphere 11.8
Nucleus accumbens
nTPM: 35.4
1856 Female, age 91, right hemisphere 53.1
2824 Male, age 61, right hemisphere 39.5
1783 Male, age 74, unknown 39.2
2286 Male, age 75, left hemisphere 38.9
1806 Female, age 85, left hemisphere 35.7
2698 Female, age 72, unknown 28.2
2732 Male, age 80, right hemisphere 27.2
2391 Female, age 94, left hemisphere 21.3
Nucleus basalis of Meynert
nTPM: 31.7
2821 Male, age 75, both hemispheres 43.7
2484 Female, age 94, left hemisphere 31.7
2393 Male, age 80, right hemisphere 29.6
2569 Male, age 61, both hemispheres 22.0
Nucleus of the diagonal band
nTPM: 74.1
2029 Male, age 61, right hemisphere 91.1
2775 Male, age 80, right hemisphere 83.5
1812 Female, age 91, both hemispheres 76.0
2195 Female, age 85, both hemispheres 71.1
1979 Male, age 74, unknown 48.6
Olfactory tubercle
nTPM: 86.4
1998 Female, age 91, both hemispheres 99.0
2487 Female, age 94, left hemisphere 96.8
2856 Male, age 75, right hemisphere 85.0
1846 Male, age 80, right hemisphere 64.9
Putamen
nTPM: 33.6
1937 Female, age 91, right hemisphere 45.8
2647 Male, age 75, left hemisphere 35.4
1838 Male, age 80, right hemisphere 34.5
1829 Male, age 74, unknown 32.9
2466 Female, age 79, unknown 32.6
2489 Female, age 72, unknown 27.1
2482 Female, age 94, left hemisphere 26.9
Septal nuclei
nTPM: 66.4
1960 Male, age 74, unknown 85.9
2629 Female, age 94, right hemisphere 75.6
2031 Female, age 72, unknown 70.5
2009 Female, age 91, both hemispheres 69.9
2394 Male, age 61, left hemisphere 69.3
2059 Female, age 85, both hemispheres 61.6
2199 Male, age 80, right hemisphere 32.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 54.6
Samples: 246

Max nTPM: 121.7
Min nTPM: 5.9
Std nTPM: 23.0
Median nTPM: 57.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 121.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 114.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 114.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 106.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 101.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 100.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 96.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 95.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 95.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 94.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 91.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 60.1
Samples: 246

Max nTPM: 287.3
Min nTPM: 2.2
Std nTPM: 28.5
Median nTPM: 59.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 287.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 214.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 144.8
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 124.7
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 123.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 115.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 107.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 100.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 100.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 99.7
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 96.1
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Brain - Putamen (basal ganglia)
Average nTPM: 51.4
Samples: 205

Max nTPM: 139.7
Min nTPM: 2.8
Std nTPM: 23.6
Median nTPM: 54.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 139.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 100.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 96.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 95.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 94.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 91.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 91.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 90.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 89.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 88.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 87.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.8
FF:10164-103B2 76 years, female 44.8
Globus pallidus
Scaled Tags Per Million: 18.3
FF:10175-103C4 60 years, female 28.4
FF:10161-103A8 76 years, female 8.3
Nucleus accumbens
Scaled Tags Per Million: 115.0
FF:10037-101F1 23-56 years, mixed 115.0
Putamen
Scaled Tags Per Million: 77.6
FF:10176-103C5 60 years, female 77.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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