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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:121.3 nTPM
HPA:121.3 nTPM
FANTOM5:13.6 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max nTPM 121.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 63.1
2032 Female, age 42, unknown 75.2
2497 Male, age 66, unknown 73.2
2396 Male, age 61, right hemisphere 41.0
Centromedial thalamic nucleus
nTPM: 52.5
2401 Male, age 76, right hemisphere 89.2
2279 Female, age 85, left hemisphere 15.7
Habenula
nTPM: 121.3
2203 Male, age 61, left hemisphere 137.7
2276 Male, age 66, unknown 132.9
1957 Male, age 80, both hemispheres 132.4
2252 Male, age 62, unknown 82.1
Lateral geniculate body
nTPM: 61.3
2106 Female, age 67, right hemisphere 105.0
1953 Male, age 62, unknown 85.4
2399 Male, age 61, left hemisphere 82.2
2035 Female, age 72, unknown 69.7
2857 Male, age 74, right hemisphere 51.3
2659 Male, age 66, unknown 38.8
2841 Male, age 80, both hemispheres 38.8
2575 Female, age 94, right hemisphere 18.9
Lateral thalamic nuclei
nTPM: 74.5
1903 Male, age 76, left hemisphere 110.6
2577 Male, age 74, both hemispheres 102.2
2661 Female, age 72, unknown 68.7
2765 Female, age 67, both hemispheres 59.0
2573 Female, age 94, left hemisphere 31.9
Medial dorsal thalamic nucleus
nTPM: 102.5
2492 Male, age 75, right hemisphere 170.8
2498 Male, age 66, unknown 158.5
1971 Male, age 61, right hemisphere 129.3
2026 Male, age 62, unknown 114.3
2283 Male, age 80, right hemisphere 110.1
1859 Male, age 76, both hemispheres 109.0
1810 Male, age 48, unknown 98.7
2576 Male, age 74, both hemispheres 95.3
2039 Female, age 72, unknown 88.3
1930 Female, age 42, unknown 82.9
2402 Female, age 67, both hemispheres 71.0
2660 Female, age 72, unknown 65.8
2572 Female, age 94, right hemisphere 38.1
Medial geniculate body
nTPM: 64.6
1811 Female, age 42, unknown 94.3
2207 Male, age 80, right hemisphere 82.0
2217 Female, age 72, unknown 70.2
2657 Male, age 74, right hemisphere 62.6
2650 Female, age 94, left hemisphere 51.5
2571 Male, age 75, right hemisphere 46.7
2049 Male, age 76, both hemispheres 44.9
Nucleus reuniens
nTPM: 68.1
2212 Female, age 67, left hemisphere 123.2
2205 Male, age 80, left hemisphere 58.2
2210 Female, age 85, left hemisphere 22.9
Nucleus rhomboideus
nTPM: 59.7
2206 Male, age 80, both hemispheres 126.0
2213 Female, age 67, left hemisphere 27.4
2280 Female, age 85, left hemisphere 25.7
Posterior thalamic nucleus
nTPM: 63.2
2266 Male, age 76, right hemisphere 82.4
2655 Male, age 74, right hemisphere 73.8
2495 Female, age 67, right hemisphere 71.1
2649 Female, age 94, both hemispheres 25.7
Pulvinar
nTPM: 83.2
1929 Male, age 48, unknown 97.8
2496 Female, age 67, right hemisphere 96.2
1972 Male, age 62, unknown 95.1
2582 Female, age 72, unknown 93.4
2214 Male, age 76, right hemisphere 84.9
1932 Male, age 80, right hemisphere 81.7
2398 Male, age 61, left hemisphere 80.6
1899 Female, age 42, unknown 79.8
2499 Male, age 66, unknown 65.5
2724 Male, age 74, right hemisphere 56.6
Subthalamic nucleus
nTPM: 66.6
2406 Female, age 72, unknown 100.1
2658 Male, age 74, both hemispheres 94.9
2275 Male, age 66, unknown 74.2
2282 Male, age 61, both hemispheres 70.0
2779 Female, age 42, unknown 61.1
2124 Male, age 62, unknown 49.1
2216 Male, age 48, unknown 44.2
2056 Female, age 72, unknown 39.3
Ventral posterolateral thalamic nucleus
nTPM: 73.5
2578 Male, age 74, both hemispheres 97.2
2197 Male, age 80, both hemispheres 93.0
2740 Male, age 76, right hemisphere 73.9
2581 Female, age 72, unknown 70.9
2397 Male, age 61, right hemisphere 67.0
2570 Male, age 75, right hemisphere 39.1
Ventral posteromedial thalamic nucleus
nTPM: 90.9
2653 Male, age 74, both hemispheres 120.9
2202 Male, age 61, left hemisphere 111.5
2758 Male, age 80, both hemispheres 106.1
2127 Male, age 76, right hemisphere 79.4
2281 Male, age 75, right hemisphere 36.5
Ventral thalamic nuclei
nTPM: 71.7
1912 Female, age 42, unknown 92.4
2285 Male, age 62, unknown 86.2
1845 Male, age 48, unknown 81.8
2652 Male, age 74, left hemisphere 79.2
1860 Male, age 76, both hemispheres 76.8
2204 Male, age 80, both hemispheres 71.6
2858 Female, age 72, unknown 58.3
2291 Female, age 72, unknown 56.0
2580 Male, age 66, unknown 42.9
Ventromedial nucleus
nTPM: 57.2
1982 Female, age 72, unknown 61.1
1822 Female, age 42, unknown 53.3
Zona incerta
nTPM: 64.8
2208 Male, age 80, right hemisphere 87.3
2663 Female, age 72, unknown 71.9
2822 Male, age 74, right hemisphere 65.0
2215 Male, age 66, unknown 57.7
2403 Male, age 62, unknown 42.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 13.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 13.6
FF:10154-103A1 76 years, female 13.6

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