HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.6 nTPM
HPA:42.6 nTPM
GTEx:80.2 nTPM
FANTOM5:215.7 Scaled Tags Per Million
Pig:239.2 nTPM
Mouse:510.2 nTPM
Allen mouse:14.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039247Antibody HPA043684Antibody HPA063394Antibody CAB004621Antibody CAB005887
Glial cells MediumNot detectedNot detectedNot detectedNot detected
Neuronal cells HighHighMediumHighHigh











HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.6
Sample id Sample description nTPM
Hippocampus
nTPM: 22.0
1898 Male, age 80, left hemisphere 40.0
2621 Female, age 67, right hemisphere 38.6
2529 Female, age 94, left hemisphere 19.6
1855 Male, age 76, left hemisphere 18.7
2148 Female, age 91, left hemisphere 15.2
1911 Female, age 85, right hemisphere 0.0
Dentate gyrus
nTPM: 23.0
1927 Female, age 91, both hemispheres 34.4
2530 Female, age 94, left hemisphere 30.7
2246 Female, age 85, both hemispheres 25.6
2531 Female, age 67, both hemispheres 19.6
2528 Male, age 74, both hemispheres 17.5
2010 Male, age 76, both hemispheres 10.0
Entorhinal gyrus
nTPM: 24.8
2764 Male, age 80, right hemisphere 38.7
1938 Female, age 85, left hemisphere 33.7
1787 Male, age 76, left hemisphere 26.2
2686 Male, age 75, right hemisphere 25.5
2613 Female, age 94, left hemisphere 24.5
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 24.2
2749 Male, age 80, left hemisphere 63.4
1873 Female, age 85, both hemispheres 24.5
2527 Male, age 74, both hemispheres 20.4
2045 Male, age 76, both hemispheres 10.2
2082 Female, age 91, right hemisphere 2.6
Hippocampus, CA2
nTPM: 21.3
1963 Male, age 80, left hemisphere 37.2
2437 Female, age 94, left hemisphere 31.2
1892 Male, age 76, both hemispheres 21.3
2249 Male, age 74, both hemispheres 16.4
1940 Female, age 85, left hemisphere 14.8
2113 Female, age 91, right hemisphere 6.8
Hippocampus, CA3
nTPM: 25.8
2861 Female, age 67, both hemispheres 39.6
2137 Male, age 80, left hemisphere 39.2
2436 Male, age 74, both hemispheres 33.0
2620 Female, age 94, left hemisphere 28.6
1891 Female, age 85, both hemispheres 8.6
1867 Male, age 76, both hemispheres 6.0
Parahippocampal cortex
nTPM: 34.8
2245 Female, age 91, both hemispheres 66.0
1850 Male, age 80, both hemispheres 50.5
2532 Female, age 72, left hemisphere 46.2
2622 Female, age 67, right hemisphere 43.1
2250 Female, age 67, right hemisphere 30.6
1990 Female, age 91, right hemisphere 28.9
1933 Female, age 85, both hemispheres 28.8
2693 Female, age 94, both hemispheres 25.8
2692 Male, age 74, both hemispheres 23.2
2018 Male, age 76, both hemispheres 4.9
Perirhinal gyrus
nTPM: 42.6
1847 Female, age 91, left hemisphere 59.5
1794 Male, age 80, right hemisphere 46.0
2521 Female, age 94, right hemisphere 39.4
2848 Male, age 76, right hemisphere 35.8
1841 Female, age 85, right hemisphere 32.3
Subiculum
nTPM: 23.4
2438 Female, age 94, left hemisphere 63.3
1977 Female, age 85, both hemispheres 29.2
1901 Male, age 80, both hemispheres 21.1
2619 Male, age 74, both hemispheres 19.9
2042 Male, age 76, both hemispheres 7.1
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 80.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 80.2
Samples: 197

Max nTPM: 312.2
Min nTPM: 7.8
Std nTPM: 56.8
Median nTPM: 68.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 312.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 248.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 235.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 233.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 221.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 219.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 199.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 197.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 185.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 179.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 179.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 215.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 215.7
FF:10169-103B7 60 years, female 334.8
FF:10153-102I9 76 years, female 96.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 239.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 239.3
Samples: 4

Max nTPM: 347.5
Min nTPM: 155.0
Sample A Female 347.5
Sample B Female 240.2
Sample C Male 155.0
Sample D Male 214.3
Entorhinal cortex
nTPM: 177.0
Samples: 4

Max nTPM: 195.3
Min nTPM: 165.8
Sample A Female 195.3
Sample B Female 169.1
Sample C Male 177.8
Sample D Male 165.8
Subiculum
nTPM: 168.3
Samples: 4

Max nTPM: 237.4
Min nTPM: 140.0
Sample A Female 237.4
Sample B Female 144.7
Sample C Male 151.2
Sample D Male 140.0
Ventral hippocampus
nTPM: 195.4
Samples: 4

Max nTPM: 254.1
Min nTPM: 110.2
Sample A Female 200.6
Sample B Female 110.2
Sample C Male 216.8
Sample D Male 254.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 510.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 494.4
Samples: 4

Max nTPM: 543.6
Min nTPM: 456.0
Sample A Male 457.0
Sample B Male 521.1
Sample C Female 456.0
Sample D Female 543.6
Hippocampal formation
nTPM: 510.3
Samples: 4

Max nTPM: 559.2
Min nTPM: 483.2
Sample A Male 501.8
Sample B Male 483.2
Sample C Female 559.2
Sample D Female 496.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.7
564648 Antisense, RP_040826_01_B04, Mouse strain C57BL/6J (56 days, male) 14.9
70616005 Antisense, RP_050725_01_D08, Mouse strain C57BL/6J (56 days, male) 14.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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