BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.3 nTPM
HPA:5.3 nTPM
GTEx:0.7 nTPM
FANTOM5:4.7 Scaled Tags Per Million
Mouse:0.4 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA000452Antibody HPA000453Antibody HPA045062Antibody CAB000029
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detectedLow








BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.3
1781 Male, age 74, unknown 3.9
2846 Female, age 79, unknown 3.3
1854 Male, age 80, left hemisphere 3.2
1857 Female, age 85, left hemisphere 3.2
2288 Male, age 75, left hemisphere 3.2
2289 Male, age 61, right hemisphere 3.2
2290 Female, age 72, unknown 3.2
2481 Female, age 94, left hemisphere 3.2
Claustrum
nTPM: 5.3
2645 Female, age 72, unknown 6.7
2568 Male, age 61, both hemispheres 6.1
2284 Female, age 91, both hemispheres 5.5
1956 Male, age 74, unknown 5.4
2198 Male, age 80, both hemispheres 5.4
2491 Male, age 75, both hemispheres 5.0
2292 Female, age 85, both hemispheres 4.7
2196 Female, age 79, unknown 4.5
2392 Female, age 94, both hemispheres 4.5
Globus pallidus, externus
nTPM: 3.3
2395 Male, age 75, both hemispheres 3.4
2772 Female, age 79, unknown 3.4
1996 Male, age 80, right hemisphere 3.2
2567 Female, age 72, unknown 3.2
2646 Male, age 61, right hemisphere 3.2
Globus pallidus, internus
nTPM: 3.2
1818 Male, age 74, unknown 3.3
2111 Female, age 85, right hemisphere 3.3
2778 Female, age 91, both hemispheres 3.3
2037 Male, age 80, right hemisphere 3.2
2287 Male, age 75, right hemisphere 3.2
2483 Female, age 94, right hemisphere 3.2
2566 Female, age 72, unknown 3.2
Nucleus accumbens
nTPM: 3.2
2391 Female, age 94, left hemisphere 3.4
1783 Male, age 74, unknown 3.3
2286 Male, age 75, left hemisphere 3.3
1806 Female, age 85, left hemisphere 3.2
1856 Female, age 91, right hemisphere 3.2
2698 Female, age 72, unknown 3.2
2732 Male, age 80, right hemisphere 3.2
2824 Male, age 61, right hemisphere 3.2
Nucleus basalis of Meynert
nTPM: 3.3
2821 Male, age 75, both hemispheres 3.6
2393 Male, age 80, right hemisphere 3.2
2484 Female, age 94, left hemisphere 3.2
2569 Male, age 61, both hemispheres 3.2
Nucleus of the diagonal band
nTPM: 4.0
2775 Male, age 80, right hemisphere 4.9
2029 Male, age 61, right hemisphere 4.5
1812 Female, age 91, both hemispheres 3.8
2195 Female, age 85, both hemispheres 3.5
1979 Male, age 74, unknown 3.3
Olfactory tubercle
nTPM: 4.4
1998 Female, age 91, both hemispheres 5.2
2487 Female, age 94, left hemisphere 4.4
1846 Male, age 80, right hemisphere 4.3
2856 Male, age 75, right hemisphere 3.9
Putamen
nTPM: 3.3
1829 Male, age 74, unknown 3.3
1838 Male, age 80, right hemisphere 3.3
2466 Female, age 79, unknown 3.3
2482 Female, age 94, left hemisphere 3.3
2647 Male, age 75, left hemisphere 3.3
1937 Female, age 91, right hemisphere 3.2
2489 Female, age 72, unknown 3.2
Septal nuclei
nTPM: 3.6
2031 Female, age 72, unknown 4.5
2059 Female, age 85, both hemispheres 3.6
1960 Male, age 74, unknown 3.5
2629 Female, age 94, right hemisphere 3.5
2009 Female, age 91, both hemispheres 3.4
2199 Male, age 80, right hemisphere 3.2
2394 Male, age 61, left hemisphere 3.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.6
Samples: 246

Max nTPM: 13.0
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 0.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 13.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 6.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 4.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 2.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.4
Samples: 246

Max nTPM: 8.2
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 0.2
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 8.2
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 5.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 4.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 2.4
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 2.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 1.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 1.6
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 1.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 1.5
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 1.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 1.4
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Brain - Putamen (basal ganglia)
Average nTPM: 0.7
Samples: 205

Max nTPM: 14.5
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 0.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 14.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 4.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 3.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 3.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 2.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 2.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 2.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 1.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 1.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 1.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.1
FF:10164-103B2 76 years, female 0.1
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 4.7
FF:10037-101F1 23-56 years, mixed 4.7
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.2
Sample C Female 0.2
Sample D Female 0.1
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Male 0.4
Sample B Male 0.2
Sample C Female 0.4
Sample D Female 0.4
Ventral forebrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.2
Sample D Female 0.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
75991022 Antisense, RP_060608_01_H01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
75991022 Antisense, RP_060608_01_H01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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