BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:43.4 nTPM
HPA:43.4 nTPM
GTEx:36.9 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:35.1 nTPM

CAUDATE - Antibody stainingi
Antibody HPA041517Antibody HPA046741
Glial cells Not detectedNot detected
Neuronal cells MediumLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.0
2481 Female, age 94, left hemisphere 44.7
1857 Female, age 85, left hemisphere 44.4
2288 Male, age 75, left hemisphere 43.3
2846 Female, age 79, unknown 43.2
1854 Male, age 80, left hemisphere 42.8
1781 Male, age 74, unknown 42.7
2290 Female, age 72, unknown 42.4
2289 Male, age 61, right hemisphere 40.8
Claustrum
nTPM: 41.3
2392 Female, age 94, both hemispheres 43.5
1956 Male, age 74, unknown 42.9
2196 Female, age 79, unknown 42.0
2491 Male, age 75, both hemispheres 41.3
2198 Male, age 80, both hemispheres 41.2
2568 Male, age 61, both hemispheres 41.1
2284 Female, age 91, both hemispheres 40.5
2292 Female, age 85, both hemispheres 40.0
2645 Female, age 72, unknown 39.0
Globus pallidus, externus
nTPM: 42.3
2395 Male, age 75, both hemispheres 45.4
2772 Female, age 79, unknown 45.4
1996 Male, age 80, right hemisphere 43.7
2646 Male, age 61, right hemisphere 39.3
2567 Female, age 72, unknown 38.0
Globus pallidus, internus
nTPM: 43.3
2287 Male, age 75, right hemisphere 46.0
2778 Female, age 91, both hemispheres 45.7
1818 Male, age 74, unknown 43.2
2037 Male, age 80, right hemisphere 42.8
2111 Female, age 85, right hemisphere 42.6
2483 Female, age 94, right hemisphere 42.1
2566 Female, age 72, unknown 40.5
Nucleus accumbens
nTPM: 43.4
2286 Male, age 75, left hemisphere 45.6
1856 Female, age 91, right hemisphere 45.0
2391 Female, age 94, left hemisphere 44.4
1806 Female, age 85, left hemisphere 43.5
2698 Female, age 72, unknown 42.5
1783 Male, age 74, unknown 42.4
2732 Male, age 80, right hemisphere 41.7
2824 Male, age 61, right hemisphere 41.7
Nucleus basalis of Meynert
nTPM: 41.5
2821 Male, age 75, both hemispheres 42.7
2393 Male, age 80, right hemisphere 42.4
2484 Female, age 94, left hemisphere 41.8
2569 Male, age 61, both hemispheres 39.0
Nucleus of the diagonal band
nTPM: 42.6
2775 Male, age 80, right hemisphere 43.5
1812 Female, age 91, both hemispheres 43.4
2029 Male, age 61, right hemisphere 42.7
2195 Female, age 85, both hemispheres 42.5
1979 Male, age 74, unknown 41.1
Olfactory tubercle
nTPM: 42.8
1846 Male, age 80, right hemisphere 43.5
1998 Female, age 91, both hemispheres 42.8
2487 Female, age 94, left hemisphere 42.8
2856 Male, age 75, right hemisphere 42.2
Putamen
nTPM: 42.2
2466 Female, age 79, unknown 44.5
2482 Female, age 94, left hemisphere 44.4
1937 Female, age 91, right hemisphere 43.8
1829 Male, age 74, unknown 42.6
1838 Male, age 80, right hemisphere 42.0
2647 Male, age 75, left hemisphere 39.2
2489 Female, age 72, unknown 38.8
Septal nuclei
nTPM: 42.6
2031 Female, age 72, unknown 45.0
2009 Female, age 91, both hemispheres 43.7
1960 Male, age 74, unknown 42.5
2394 Male, age 61, left hemisphere 42.1
2629 Female, age 94, right hemisphere 42.1
2059 Female, age 85, both hemispheres 41.5
2199 Male, age 80, right hemisphere 41.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.6
Samples: 246

Max nTPM: 58.7
Min nTPM: 23.7
Std nTPM: 6.0
Median nTPM: 34.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 58.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 57.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 57.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 52.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 51.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 51.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 51.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 50.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 50.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 49.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 48.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.6
Samples: 246

Max nTPM: 57.9
Min nTPM: 21.5
Std nTPM: 6.7
Median nTPM: 34.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 57.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 57.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 57.6
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 56.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 52.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 51.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 51.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 49.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 48.4
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 47.5
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 47.4
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Brain - Putamen (basal ganglia)
Average nTPM: 36.9
Samples: 205

Max nTPM: 56.4
Min nTPM: 24.3
Std nTPM: 5.9
Median nTPM: 36.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 56.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 53.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 53.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 53.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 51.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 51.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 50.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 49.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 49.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 47.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.3
FF:10164-103B2 76 years, female 39.3
Globus pallidus
Scaled Tags Per Million: 37.2
FF:10175-103C4 60 years, female 41.0
FF:10161-103A8 76 years, female 33.4
Nucleus accumbens
Scaled Tags Per Million: 43.7
FF:10037-101F1 23-56 years, mixed 43.7
Putamen
Scaled Tags Per Million: 35.8
FF:10176-103C5 60 years, female 35.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Caudate
nTPM: 6.6
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.2
Sample A Female 6.8
Sample B Female 6.5
Sample C Male 7.0
Sample D Male 6.2
Putamen
nTPM: 7.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 6.4
Sample A Female 6.6
Sample B Female 6.4
Sample C Male 10.2
Sample D Male 6.8
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.6
Sample A Female 7.9
Sample B Female 6.8
Sample C Male 8.0
Sample D Male 6.6
Ventral pallidum
nTPM: 6.6
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.3
Sample A Female 7.2
Sample B Female 7.8
Sample C Male 5.9
Sample D Male 5.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.4
Samples: 4

Max nTPM: 31.8
Min nTPM: 30.9
Sample A Male 31.4
Sample B Male 31.8
Sample C Female 31.6
Sample D Female 30.9
Septum
nTPM: 35.1
Samples: 4

Max nTPM: 37.8
Min nTPM: 32.1
Sample A Male 32.1
Sample B Male 36.7
Sample C Female 37.8
Sample D Female 33.8
Ventral forebrain
nTPM: 34.2
Samples: 4

Max nTPM: 39.8
Min nTPM: 29.2
Sample A Male 34.1
Sample B Male 33.5
Sample C Female 39.8
Sample D Female 29.2

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