MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.8 nTPM
HPA:42.8 nTPM
GTEx:41.0 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:7.9 nTPM
Mouse:30.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.2
1870 Female, age 42, unknown 43.2
2019 Male, age 18, unknown 42.3
2411 Female, age 72, unknown 42.3
1833 Male, age 53, unknown 42.2
1830 Male, age 51, unknown 42.0
2219 Male, age 76, both hemispheres 41.7
1827 Male, age 72, unknown 41.1
2828 Female, age 72, unknown 40.3
2666 Male, age 74, left hemisphere 39.5
2586 Male, age 75, left hemisphere 37.7
Dorsal raphe nucleus
nTPM: 42.5
2298 Female, age 72, unknown 43.9
2750 Male, age 76, both hemispheres 42.9
1828 Male, age 53, unknown 42.7
2016 Female, age 72, unknown 41.5
2047 Male, age 72, unknown 41.3
Inferior colliculus
nTPM: 42.4
2097 Female, age 72, unknown 45.0
1848 Female, age 42, unknown 42.2
1890 Male, age 53, unknown 41.9
2849 Male, age 72, unknown 40.7
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 42.8
1921 Female, age 85, both hemispheres 43.2
2334 Male, age 80, both hemispheres 42.7
2338 Male, age 61, both hemispheres 42.5
Periaquaductal grey, anterior
nTPM: 41.6
1947 Male, age 18, unknown 42.7
2502 Female, age 75, unknown 41.6
1795 Male, age 51, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 41.2
1840 Male, age 53, unknown 41.5
2850 Male, age 76, both hemispheres 41.5
2464 Female, age 72, unknown 41.1
1831 Male, age 72, unknown 40.9
Periaquaductal grey, lateral
nTPM: 42.6
2272 Male, age 74, both hemispheres 43.8
2140 Male, age 76, both hemispheres 42.2
2053 Male, age 18, unknown 42.0
Pretectal area
nTPM: 42.6
2273 Male, age 74, both hemispheres 44.5
2224 Female, age 72, unknown 44.2
2667 Female, age 75, unknown 43.4
1944 Female, age 72, unknown 43.0
1816 Male, age 51, unknown 42.9
1817 Female, age 42, unknown 42.8
2316 Male, age 76, right hemisphere 42.5
2007 Male, age 72, unknown 42.4
1815 Male, age 53, unknown 42.0
2825 Male, age 18, unknown 41.4
2407 Male, age 75, both hemispheres 40.0
Red nucleus
nTPM: 42.4
1821 Female, age 72, unknown 44.5
2725 Female, age 75, unknown 43.4
2227 Male, age 72, unknown 43.1
1904 Male, age 53, unknown 42.9
1954 Female, age 42, unknown 42.9
2785 Male, age 18, unknown 42.8
2823 Male, age 76, right hemisphere 42.8
1865 Male, age 51, unknown 42.7
2503 Female, age 72, unknown 42.5
2769 Male, age 72, unknown 42.4
2584 Male, age 75, left hemisphere 39.9
2588 Male, age 74, left hemisphere 39.5
Substantia nigra
nTPM: 42.0
2241 Male, age 72, unknown 44.7
1916 Female, age 42, unknown 43.1
1851 Male, age 51, unknown 43.0
1889 Female, age 72, unknown 42.9
2409 Female, age 72, unknown 42.6
1941 Male, age 53, unknown 41.6
2590 Female, age 75, unknown 41.0
2699 Male, age 18, unknown 40.7
2665 Male, age 74, both hemispheres 40.4
2583 Male, age 75, right hemisphere 39.9
Superior colliculus
nTPM: 41.7
2587 Male, age 74, left hemisphere 43.5
1895 Male, age 76, right hemisphere 43.2
2087 Female, age 72, unknown 42.3
1913 Female, age 42, unknown 42.2
1796 Male, age 53, unknown 41.9
1995 Male, age 72, unknown 41.8
2261 Male, age 18, unknown 41.8
2668 Female, age 75, unknown 41.0
1839 Male, age 51, unknown 40.6
2664 Male, age 75, both hemispheres 38.8
Ventral tegmental area
nTPM: 42.4
2410 Female, age 72, unknown 43.5
1915 Female, age 42, unknown 42.6
2223 Female, age 72, unknown 42.6
2218 Male, age 76, both hemispheres 42.5
1942 Male, age 51, unknown 42.2
2021 Male, age 53, unknown 41.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.0
Samples: 139

Max nTPM: 67.9
Min nTPM: 27.2
Std nTPM: 7.8
Median nTPM: 39.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 67.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 62.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 62.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 55.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 54.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 53.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 52.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 51.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 51.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.9
Pig sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.0
Sample C Male 7.8
Sample D Male 7.2
Periaqueductal gray
nTPM: 6.0
Samples: 3

Max nTPM: 6.8
Min nTPM: 5.5
Sample B Female 5.8
Sample C Male 6.8
Sample D Male 5.5
Substantia nigra
nTPM: 8.0
Samples: 4

Max nTPM: 11.9
Min nTPM: 3.8
Sample A Female 11.9
Sample B Female 7.9
Sample C Male 8.2
Sample D Male 3.8
Superior colliculi
nTPM: 7.4
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.8
Sample A Female 8.3
Sample B Female 7.8
Sample C Male 7.5
Sample D Male 5.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 33.0
Min nTPM: 29.0
Sample A Male 33.0
Sample B Male 29.7
Sample C Female 29.0
Sample D Female 29.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.