BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:7.1 nTPM
HPA:7.1 nTPM
GTEx:7.3 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Mouse:1.7 nTPM
Allen mouse:3.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA042027
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.8
1854 Male, age 80, left hemisphere 6.5
2846 Female, age 79, unknown 6.2
2288 Male, age 75, left hemisphere 6.0
1781 Male, age 74, unknown 5.8
2481 Female, age 94, left hemisphere 5.8
2290 Female, age 72, unknown 5.7
1857 Female, age 85, left hemisphere 5.3
2289 Male, age 61, right hemisphere 5.0
Claustrum
nTPM: 6.0
1956 Male, age 74, unknown 6.5
2568 Male, age 61, both hemispheres 6.5
2284 Female, age 91, both hemispheres 6.4
2392 Female, age 94, both hemispheres 6.4
2491 Male, age 75, both hemispheres 6.0
2198 Male, age 80, both hemispheres 5.7
2292 Female, age 85, both hemispheres 5.7
2645 Female, age 72, unknown 5.6
2196 Female, age 79, unknown 5.4
Globus pallidus, externus
nTPM: 5.6
2772 Female, age 79, unknown 6.0
2395 Male, age 75, both hemispheres 5.8
1996 Male, age 80, right hemisphere 5.6
2567 Female, age 72, unknown 5.6
2646 Male, age 61, right hemisphere 5.0
Globus pallidus, internus
nTPM: 5.8
1818 Male, age 74, unknown 6.2
2566 Female, age 72, unknown 6.0
2037 Male, age 80, right hemisphere 5.9
2778 Female, age 91, both hemispheres 5.9
2287 Male, age 75, right hemisphere 5.8
2111 Female, age 85, right hemisphere 5.7
2483 Female, age 94, right hemisphere 5.0
Nucleus accumbens
nTPM: 6.0
1856 Female, age 91, right hemisphere 6.6
2824 Male, age 61, right hemisphere 6.6
2391 Female, age 94, left hemisphere 6.2
1806 Female, age 85, left hemisphere 6.0
2286 Male, age 75, left hemisphere 6.0
2698 Female, age 72, unknown 5.8
1783 Male, age 74, unknown 5.6
2732 Male, age 80, right hemisphere 5.5
Nucleus basalis of Meynert
nTPM: 5.7
2484 Female, age 94, left hemisphere 6.3
2393 Male, age 80, right hemisphere 6.2
2821 Male, age 75, both hemispheres 5.5
2569 Male, age 61, both hemispheres 4.8
Nucleus of the diagonal band
nTPM: 6.3
2029 Male, age 61, right hemisphere 7.8
2775 Male, age 80, right hemisphere 6.7
2195 Female, age 85, both hemispheres 6.6
1812 Female, age 91, both hemispheres 5.4
1979 Male, age 74, unknown 5.2
Olfactory tubercle
nTPM: 7.1
2487 Female, age 94, left hemisphere 7.8
1846 Male, age 80, right hemisphere 7.5
2856 Male, age 75, right hemisphere 6.7
1998 Female, age 91, both hemispheres 6.5
Putamen
nTPM: 6.0
2466 Female, age 79, unknown 6.3
1838 Male, age 80, right hemisphere 6.2
1937 Female, age 91, right hemisphere 6.2
1829 Male, age 74, unknown 6.1
2482 Female, age 94, left hemisphere 6.0
2647 Male, age 75, left hemisphere 6.0
2489 Female, age 72, unknown 5.5
Septal nuclei
nTPM: 5.7
2629 Female, age 94, right hemisphere 6.2
2031 Female, age 72, unknown 6.1
2009 Female, age 91, both hemispheres 6.0
1960 Male, age 74, unknown 5.9
2059 Female, age 85, both hemispheres 5.4
2394 Male, age 61, left hemisphere 5.4
2199 Male, age 80, right hemisphere 5.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.0
Samples: 246

Max nTPM: 15.7
Min nTPM: 3.4
Std nTPM: 2.1
Median nTPM: 6.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 15.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 14.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 14.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 13.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 12.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 12.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 12.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 12.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 12.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 11.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 11.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.3
Samples: 246

Max nTPM: 15.9
Min nTPM: 3.2
Std nTPM: 2.0
Median nTPM: 7.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 15.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 13.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 13.1
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 12.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 12.7
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 11.9
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 11.6
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 11.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 11.3
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 11.2
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 11.2
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Brain - Putamen (basal ganglia)
Average nTPM: 7.0
Samples: 205

Max nTPM: 15.7
Min nTPM: 3.2
Std nTPM: 2.2
Median nTPM: 6.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 15.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 14.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 12.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 12.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 12.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 12.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 11.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 11.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 11.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 11.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 11.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.4
FF:10164-103B2 76 years, female 12.4
Globus pallidus
Scaled Tags Per Million: 12.6
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 12.6
Nucleus accumbens
Scaled Tags Per Million: 11.5
FF:10037-101F1 23-56 years, mixed 11.5
Putamen
Scaled Tags Per Million: 14.9
FF:10176-103C5 60 years, female 14.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.7
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.1
Sample A Male 1.4
Sample B Male 1.1
Sample C Female 2.4
Sample D Female 1.9
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.9
Sample A Male 1.0
Sample B Male 1.0
Sample C Female 1.1
Sample D Female 0.9
Ventral forebrain
nTPM: 0.6
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.2
Sample A Male 0.5
Sample B Male 0.4
Sample C Female 0.2
Sample D Female 1.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.6
68498289 Antisense, RP_050113_01_F07, Mouse strain C57BL/6J (56 days, male) 3.6
Pallidum
Expression energy: 2.4
68498289 Antisense, RP_050113_01_F07, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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