BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.2 nTPM
HPA:5.2 nTPM
GTEx:5.8 nTPM
FANTOM5:14.0 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA041416
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.1
2481 Female, age 94, left hemisphere 5.5
2288 Male, age 75, left hemisphere 5.4
1781 Male, age 74, unknown 5.3
1854 Male, age 80, left hemisphere 5.3
2290 Female, age 72, unknown 4.9
2289 Male, age 61, right hemisphere 4.8
2846 Female, age 79, unknown 4.8
1857 Female, age 85, left hemisphere 4.7
Claustrum
nTPM: 3.7
2491 Male, age 75, both hemispheres 4.6
2284 Female, age 91, both hemispheres 3.9
1956 Male, age 74, unknown 3.8
2196 Female, age 79, unknown 3.8
2392 Female, age 94, both hemispheres 3.8
2198 Male, age 80, both hemispheres 3.7
2568 Male, age 61, both hemispheres 3.4
2292 Female, age 85, both hemispheres 3.2
2645 Female, age 72, unknown 2.9
Globus pallidus, externus
nTPM: 4.3
2772 Female, age 79, unknown 6.0
1996 Male, age 80, right hemisphere 4.5
2395 Male, age 75, both hemispheres 4.2
2567 Female, age 72, unknown 3.5
2646 Male, age 61, right hemisphere 3.5
Globus pallidus, internus
nTPM: 4.9
2287 Male, age 75, right hemisphere 5.9
1818 Male, age 74, unknown 5.6
2778 Female, age 91, both hemispheres 5.2
2037 Male, age 80, right hemisphere 4.6
2483 Female, age 94, right hemisphere 4.6
2111 Female, age 85, right hemisphere 4.4
2566 Female, age 72, unknown 4.0
Nucleus accumbens
nTPM: 5.2
2824 Male, age 61, right hemisphere 6.9
2286 Male, age 75, left hemisphere 5.6
1856 Female, age 91, right hemisphere 5.5
2391 Female, age 94, left hemisphere 5.2
1806 Female, age 85, left hemisphere 4.9
1783 Male, age 74, unknown 4.8
2698 Female, age 72, unknown 4.6
2732 Male, age 80, right hemisphere 3.7
Nucleus basalis of Meynert
nTPM: 4.5
2484 Female, age 94, left hemisphere 5.1
2393 Male, age 80, right hemisphere 4.7
2821 Male, age 75, both hemispheres 4.6
2569 Male, age 61, both hemispheres 3.7
Nucleus of the diagonal band
nTPM: 3.5
1812 Female, age 91, both hemispheres 4.0
2029 Male, age 61, right hemisphere 3.9
1979 Male, age 74, unknown 3.4
2195 Female, age 85, both hemispheres 3.1
2775 Male, age 80, right hemisphere 3.1
Olfactory tubercle
nTPM: 3.9
2856 Male, age 75, right hemisphere 4.3
1998 Female, age 91, both hemispheres 3.9
1846 Male, age 80, right hemisphere 3.8
2487 Female, age 94, left hemisphere 3.6
Putamen
nTPM: 4.8
1838 Male, age 80, right hemisphere 5.7
1937 Female, age 91, right hemisphere 5.6
2466 Female, age 79, unknown 5.1
2482 Female, age 94, left hemisphere 5.0
1829 Male, age 74, unknown 4.4
2647 Male, age 75, left hemisphere 4.2
2489 Female, age 72, unknown 3.7
Septal nuclei
nTPM: 3.4
2031 Female, age 72, unknown 4.2
2629 Female, age 94, right hemisphere 3.8
2009 Female, age 91, both hemispheres 3.6
2394 Male, age 61, left hemisphere 3.3
2199 Male, age 80, right hemisphere 3.2
1960 Male, age 74, unknown 2.9
2059 Female, age 85, both hemispheres 2.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.5
Samples: 246

Max nTPM: 11.7
Min nTPM: 2.3
Std nTPM: 1.6
Median nTPM: 5.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 11.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 9.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 9.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 9.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 9.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 9.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 9.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 9.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 9.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 8.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 8.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.8
Samples: 246

Max nTPM: 16.5
Min nTPM: 1.9
Std nTPM: 2.0
Median nTPM: 5.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 16.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 16.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 12.5
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 11.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 11.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 11.1
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 10.8
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 10.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 10.2
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 10.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 9.8
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Brain - Putamen (basal ganglia)
Average nTPM: 5.2
Samples: 205

Max nTPM: 12.1
Min nTPM: 2.2
Std nTPM: 1.6
Median nTPM: 4.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 12.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 10.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 10.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 9.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 9.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 8.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 8.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 8.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 8.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 8.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 8.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.3
FF:10164-103B2 76 years, female 9.3
Globus pallidus
Scaled Tags Per Million: 7.4
FF:10161-103A8 76 years, female 10.1
FF:10175-103C4 60 years, female 4.7
Nucleus accumbens
Scaled Tags Per Million: 14.0
FF:10037-101F1 23-56 years, mixed 14.0
Putamen
Scaled Tags Per Million: 10.7
FF:10176-103C5 60 years, female 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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