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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:156.9 nTPM
HPA:156.9 nTPM
GTEx:246.0 nTPM
FANTOM5:169.0 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:238.4 nTPM
Allen mouse:15.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 156.9
Sample id Sample description nTPM
Amygdala
nTPM: 156.9
2814 Male, age 76, right hemisphere 168.2
2514 Male, age 75, right hemisphere 156.6
2695 Female, age 67, right hemisphere 155.6
1987 Female, age 91, left hemisphere 153.3
2517 Female, age 94, left hemisphere 150.6
Basal amygdala
nTPM: 154.2
2609 Male, age 75, right hemisphere 158.0
1955 Male, age 76, both hemispheres 156.8
2243 Female, age 91, right hemisphere 154.5
2685 Female, age 94, left hemisphere 153.4
2110 Male, age 80, left hemisphere 153.0
2827 Female, age 67, right hemisphere 149.8
Central amygdala
nTPM: 154.9
1905 Male, age 76, both hemispheres 159.4
2826 Female, age 94, left hemisphere 158.9
2701 Female, age 91, right hemisphere 154.1
2239 Male, age 80, left hemisphere 151.9
2515 Male, age 75, right hemisphere 150.3
Corticomedial amygdala
nTPM: 153.6
2240 Male, age 76, both hemispheres 157.1
2829 Male, age 80, left hemisphere 156.1
2429 Female, age 94, left hemisphere 154.1
2242 Female, age 91, right hemisphere 153.5
2428 Male, age 75, right hemisphere 153.5
2535 Female, age 67, right hemisphere 147.1
Lateral amygdala
nTPM: 151.4
1883 Male, age 76, both hemispheres 160.3
2534 Female, age 94, left hemisphere 153.3
2516 Male, age 75, right hemisphere 152.5
2255 Female, age 91, right hemisphere 148.4
2256 Male, age 80, left hemisphere 147.1
2830 Female, age 67, right hemisphere 146.9
Stria terminalis, bed nucleus
nTPM: 156.1
1974 Female, age 91, both hemispheres 164.8
2486 Female, age 94, both hemispheres 153.0
2201 Male, age 74, unknown 150.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 246.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 246.0
Samples: 152

Max nTPM: 863.7
Min nTPM: 128.3
Std nTPM: 90.6
Median nTPM: 229.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 863.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 594.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 516.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 484.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 466.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 437.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 405.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 383.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 378.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 373.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 368.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 365.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 358.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 348.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 345.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 339.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 338.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 321.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 320.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 320.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 316.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 312.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 310.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 305.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 303.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 302.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 296.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 295.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 293.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 290.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 290.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 285.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 284.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 282.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 279.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 278.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 277.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 273.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 266.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 265.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 264.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 263.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 262.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 261.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 261.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 260.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 260.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 259.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 259.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 255.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 254.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 254.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 254.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 252.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 249.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 249.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 249.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 248.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 248.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 247.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 246.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 245.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 243.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 242.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 242.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 241.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 241.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 240.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 237.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 236.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 235.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 235.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 233.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 233.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 230.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 229.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 229.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 228.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 228.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 225.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 225.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 225.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 225.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 224.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 223.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 219.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 219.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 219.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 218.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 217.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 217.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 216.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 215.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 213.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 211.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 211.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 210.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 209.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 207.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 204.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 203.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 203.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 201.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 200.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 200.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 199.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 198.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 196.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 196.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 196.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 195.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 193.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 191.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 191.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 189.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 188.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 188.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 188.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 188.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 183.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 183.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 181.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 181.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 179.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 179.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 178.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 178.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 177.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 176.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 173.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 173.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 171.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 171.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 170.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 168.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 167.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 165.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 159.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 157.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 154.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 153.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 151.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 151.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 150.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 150.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 148.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 145.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 139.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 136.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 136.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 133.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 169.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 169.0
FF:10151-102I7 76 years, female 169.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.0
Pig sample Sample description nTPM
Amygdala
nTPM: 52.0
Samples: 4

Max nTPM: 77.2
Min nTPM: 40.5
Sample A Female 77.2
Sample B Female 46.6
Sample C Male 43.5
Sample D Male 40.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 238.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 238.4
Samples: 4

Max nTPM: 249.9
Min nTPM: 229.9
Sample A Male 249.9
Sample B Male 235.7
Sample C Female 238.2
Sample D Female 229.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.1
393259 Antisense, RP_040809_01_B01, Mouse strain C57BL/6J (56 days, male) 15.1

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