BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.5 nTPM
HPA:5.5 nTPM
GTEx:4.1 nTPM
FANTOM5:15.1 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:4.3 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023523Antibody HPA029823
Glial cells LowLow
Neuronal cells LowLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.3
2481 Female, age 94, left hemisphere 5.8
1857 Female, age 85, left hemisphere 5.6
1781 Male, age 74, unknown 5.5
2288 Male, age 75, left hemisphere 5.3
2290 Female, age 72, unknown 5.3
2846 Female, age 79, unknown 5.2
1854 Male, age 80, left hemisphere 5.1
2289 Male, age 61, right hemisphere 5.0
Claustrum
nTPM: 4.8
2392 Female, age 94, both hemispheres 5.2
2198 Male, age 80, both hemispheres 5.1
2292 Female, age 85, both hemispheres 5.1
1956 Male, age 74, unknown 4.9
2196 Female, age 79, unknown 4.7
2284 Female, age 91, both hemispheres 4.7
2491 Male, age 75, both hemispheres 4.7
2645 Female, age 72, unknown 4.5
2568 Male, age 61, both hemispheres 4.4
Globus pallidus, externus
nTPM: 5.2
2395 Male, age 75, both hemispheres 5.7
2772 Female, age 79, unknown 5.7
1996 Male, age 80, right hemisphere 5.3
2567 Female, age 72, unknown 5.0
2646 Male, age 61, right hemisphere 4.3
Globus pallidus, internus
nTPM: 5.5
2287 Male, age 75, right hemisphere 6.3
2778 Female, age 91, both hemispheres 5.8
2037 Male, age 80, right hemisphere 5.6
2483 Female, age 94, right hemisphere 5.4
1818 Male, age 74, unknown 5.2
2566 Female, age 72, unknown 5.2
2111 Female, age 85, right hemisphere 5.1
Nucleus accumbens
nTPM: 5.4
2286 Male, age 75, left hemisphere 5.7
2391 Female, age 94, left hemisphere 5.5
2824 Male, age 61, right hemisphere 5.5
1856 Female, age 91, right hemisphere 5.4
1783 Male, age 74, unknown 5.3
1806 Female, age 85, left hemisphere 5.2
2698 Female, age 72, unknown 5.2
2732 Male, age 80, right hemisphere 5.0
Nucleus basalis of Meynert
nTPM: 5.0
2484 Female, age 94, left hemisphere 5.3
2821 Male, age 75, both hemispheres 5.1
2393 Male, age 80, right hemisphere 5.0
2569 Male, age 61, both hemispheres 4.6
Nucleus of the diagonal band
nTPM: 4.9
1812 Female, age 91, both hemispheres 5.1
1979 Male, age 74, unknown 5.1
2029 Male, age 61, right hemisphere 4.9
2775 Male, age 80, right hemisphere 4.8
2195 Female, age 85, both hemispheres 4.4
Olfactory tubercle
nTPM: 4.8
1846 Male, age 80, right hemisphere 5.1
1998 Female, age 91, both hemispheres 4.9
2487 Female, age 94, left hemisphere 4.7
2856 Male, age 75, right hemisphere 4.7
Putamen
nTPM: 5.1
2466 Female, age 79, unknown 5.8
1838 Male, age 80, right hemisphere 5.4
2482 Female, age 94, left hemisphere 5.4
1937 Female, age 91, right hemisphere 5.1
1829 Male, age 74, unknown 4.8
2647 Male, age 75, left hemisphere 4.8
2489 Female, age 72, unknown 4.6
Septal nuclei
nTPM: 4.8
2031 Female, age 72, unknown 5.2
2394 Male, age 61, left hemisphere 5.0
2629 Female, age 94, right hemisphere 5.0
2009 Female, age 91, both hemispheres 4.8
2199 Male, age 80, right hemisphere 4.8
2059 Female, age 85, both hemispheres 4.6
1960 Male, age 74, unknown 4.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.0
Samples: 246

Max nTPM: 7.1
Min nTPM: 1.9
Std nTPM: 0.6
Median nTPM: 4.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 7.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 6.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 6.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 5.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 5.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 5.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 5.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 5.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 5.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 5.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 5.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.9
Samples: 246

Max nTPM: 7.4
Min nTPM: 2.2
Std nTPM: 0.8
Median nTPM: 3.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 7.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 6.7
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 6.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 6.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 6.3
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 6.1
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 6.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 5.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 5.8
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 5.8
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 5.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 4.1
Samples: 205

Max nTPM: 7.1
Min nTPM: 2.3
Std nTPM: 0.7
Median nTPM: 4.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 7.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 6.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 6.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 6.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 5.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 5.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 5.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 5.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 5.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 5.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 5.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.1
FF:10164-103B2 76 years, female 10.1
Globus pallidus
Scaled Tags Per Million: 15.1
FF:10175-103C4 60 years, female 20.5
FF:10161-103A8 76 years, female 9.7
Nucleus accumbens
Scaled Tags Per Million: 10.5
FF:10037-101F1 23-56 years, mixed 10.5
Putamen
Scaled Tags Per Million: 9.4
FF:10176-103C5 60 years, female 9.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.6
Pig sample Sample description nTPM
Caudate
nTPM: 7.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.8
Sample A Female 7.7
Sample B Female 6.8
Sample C Male 7.5
Sample D Male 6.9
Putamen
nTPM: 8.7
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.7
Sample A Female 9.2
Sample B Female 7.7
Sample C Male 9.6
Sample D Male 8.2
Septum
nTPM: 8.1
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.4
Sample A Female 8.7
Sample B Female 7.8
Sample C Male 8.6
Sample D Male 7.4
Ventral pallidum
nTPM: 8.1
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.4
Sample A Female 8.2
Sample B Female 8.1
Sample C Male 8.6
Sample D Male 7.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.4
Sample A Male 3.5
Sample B Male 4.5
Sample C Female 3.9
Sample D Female 3.4
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.6
Sample A Male 4.3
Sample B Male 4.1
Sample C Female 3.6
Sample D Female 5.2
Ventral forebrain
nTPM: 4.3
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.9
Sample A Male 3.9
Sample B Male 4.2
Sample C Female 4.2
Sample D Female 4.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
587425 Antisense, RP_040831_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
587425 Antisense, RP_040831_01_F09, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.