BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.9 nTPM
HPA:48.9 nTPM
GTEx:45.5 nTPM
FANTOM5:73.8 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:56.2 nTPM
Allen mouse:4.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA052481
Glial cells Not detected
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 48.9
2290 Female, age 72, unknown 83.8
2846 Female, age 79, unknown 61.8
1857 Female, age 85, left hemisphere 58.5
2289 Male, age 61, right hemisphere 49.0
1781 Male, age 74, unknown 46.7
1854 Male, age 80, left hemisphere 39.1
2288 Male, age 75, left hemisphere 29.4
2481 Female, age 94, left hemisphere 22.6
Claustrum
nTPM: 23.2
2645 Female, age 72, unknown 43.4
2196 Female, age 79, unknown 33.6
2568 Male, age 61, both hemispheres 30.1
2284 Female, age 91, both hemispheres 26.2
2292 Female, age 85, both hemispheres 17.4
2198 Male, age 80, both hemispheres 16.6
1956 Male, age 74, unknown 15.9
2491 Male, age 75, both hemispheres 14.0
2392 Female, age 94, both hemispheres 11.4
Globus pallidus, externus
nTPM: 3.9
2646 Male, age 61, right hemisphere 13.8
2567 Female, age 72, unknown 5.3
2395 Male, age 75, both hemispheres 0.3
1996 Male, age 80, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 2.4
2483 Female, age 94, right hemisphere 11.5
2566 Female, age 72, unknown 4.1
2037 Male, age 80, right hemisphere 1.5
1818 Male, age 74, unknown 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 41.6
1783 Male, age 74, unknown 68.7
1806 Female, age 85, left hemisphere 61.0
2824 Male, age 61, right hemisphere 51.1
2698 Female, age 72, unknown 47.2
1856 Female, age 91, right hemisphere 46.1
2286 Male, age 75, left hemisphere 32.2
2732 Male, age 80, right hemisphere 14.0
2391 Female, age 94, left hemisphere 12.2
Nucleus basalis of Meynert
nTPM: 26.1
2484 Female, age 94, left hemisphere 30.7
2569 Male, age 61, both hemispheres 27.6
2393 Male, age 80, right hemisphere 23.7
2821 Male, age 75, both hemispheres 22.4
Nucleus of the diagonal band
nTPM: 25.7
2195 Female, age 85, both hemispheres 36.1
1979 Male, age 74, unknown 26.6
2029 Male, age 61, right hemisphere 23.8
2775 Male, age 80, right hemisphere 21.8
1812 Female, age 91, both hemispheres 20.1
Olfactory tubercle
nTPM: 18.7
2856 Male, age 75, right hemisphere 22.1
1846 Male, age 80, right hemisphere 19.1
2487 Female, age 94, left hemisphere 17.9
1998 Female, age 91, both hemispheres 15.9
Putamen
nTPM: 45.2
2489 Female, age 72, unknown 59.3
1838 Male, age 80, right hemisphere 51.1
1829 Male, age 74, unknown 47.7
2647 Male, age 75, left hemisphere 47.7
2466 Female, age 79, unknown 46.5
1937 Female, age 91, right hemisphere 43.2
2482 Female, age 94, left hemisphere 21.0
Septal nuclei
nTPM: 21.0
1960 Male, age 74, unknown 36.0
2059 Female, age 85, both hemispheres 23.8
2031 Female, age 72, unknown 21.5
2629 Female, age 94, right hemisphere 18.5
2009 Female, age 91, both hemispheres 18.0
2394 Male, age 61, left hemisphere 15.6
2199 Male, age 80, right hemisphere 13.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.1
Samples: 246

Max nTPM: 86.0
Min nTPM: 4.6
Std nTPM: 16.0
Median nTPM: 38.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 86.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 81.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 81.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 81.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 78.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 77.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 71.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 70.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 70.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 70.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 70.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.5
Samples: 246

Max nTPM: 100.5
Min nTPM: 6.1
Std nTPM: 17.4
Median nTPM: 45.8
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 100.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 91.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 85.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 82.8
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 81.2
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 80.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 80.8
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 79.7
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 78.0
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 76.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 75.2
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Brain - Putamen (basal ganglia)
Average nTPM: 37.6
Samples: 205

Max nTPM: 80.4
Min nTPM: 9.3
Std nTPM: 15.1
Median nTPM: 35.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 80.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 77.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 74.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 73.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 72.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 71.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 70.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 69.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 68.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 68.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 67.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.6
FF:10164-103B2 76 years, female 63.6
Globus pallidus
Scaled Tags Per Million: 32.9
FF:10175-103C4 60 years, female 46.5
FF:10161-103A8 76 years, female 19.3
Nucleus accumbens
Scaled Tags Per Million: 66.4
FF:10037-101F1 23-56 years, mixed 66.4
Putamen
Scaled Tags Per Million: 73.8
FF:10176-103C5 60 years, female 73.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Caudate
nTPM: 27.4
Samples: 4

Max nTPM: 32.5
Min nTPM: 18.8
Sample A Female 18.8
Sample B Female 32.1
Sample C Male 32.5
Sample D Male 26.1
Putamen
nTPM: 20.6
Samples: 4

Max nTPM: 24.7
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 22.7
Sample C Male 24.6
Sample D Male 24.7
Septum
nTPM: 15.7
Samples: 4

Max nTPM: 21.6
Min nTPM: 10.9
Sample A Female 21.6
Sample B Female 18.5
Sample C Male 10.9
Sample D Male 11.9
Ventral pallidum
nTPM: 17.7
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.3
Sample A Female 20.1
Sample B Female 18.3
Sample C Male 14.3
Sample D Male 18.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 56.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 56.2
Samples: 4

Max nTPM: 61.5
Min nTPM: 48.7
Sample A Male 61.2
Sample B Male 61.5
Sample C Female 48.7
Sample D Female 53.5
Septum
nTPM: 29.3
Samples: 4

Max nTPM: 35.0
Min nTPM: 26.6
Sample A Male 28.8
Sample B Male 35.0
Sample C Female 26.7
Sample D Female 26.6
Ventral forebrain
nTPM: 37.6
Samples: 4

Max nTPM: 42.7
Min nTPM: 34.3
Sample A Male 37.5
Sample B Male 34.3
Sample C Female 42.7
Sample D Female 35.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.1
69289285 Antisense, RP_050407_02_H06, Mouse strain C57BL/6J (56 days, male) 4.1
Pallidum
Expression energy: 3.0
69289285 Antisense, RP_050407_02_H06, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

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