BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:55.4 nTPM
HPA:55.4 nTPM
GTEx:38.6 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:17.6 nTPM
Allen mouse:11.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA055649
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.4
2481 Female, age 94, left hemisphere 46.7
1854 Male, age 80, left hemisphere 45.5
1857 Female, age 85, left hemisphere 45.4
2288 Male, age 75, left hemisphere 45.2
2846 Female, age 79, unknown 45.1
2290 Female, age 72, unknown 45.0
2289 Male, age 61, right hemisphere 42.8
1781 Male, age 74, unknown 39.4
Claustrum
nTPM: 41.8
1956 Male, age 74, unknown 44.7
2196 Female, age 79, unknown 44.5
2392 Female, age 94, both hemispheres 44.2
2292 Female, age 85, both hemispheres 44.0
2491 Male, age 75, both hemispheres 43.1
2198 Male, age 80, both hemispheres 40.7
2568 Male, age 61, both hemispheres 39.2
2645 Female, age 72, unknown 38.5
2284 Female, age 91, both hemispheres 37.4
Globus pallidus, externus
nTPM: 55.4
2567 Female, age 72, unknown 59.4
1996 Male, age 80, right hemisphere 57.7
2646 Male, age 61, right hemisphere 55.1
2772 Female, age 79, unknown 53.5
2395 Male, age 75, both hemispheres 51.1
Globus pallidus, internus
nTPM: 55.4
2287 Male, age 75, right hemisphere 60.6
2483 Female, age 94, right hemisphere 59.3
2111 Female, age 85, right hemisphere 55.4
2778 Female, age 91, both hemispheres 55.3
2566 Female, age 72, unknown 54.0
2037 Male, age 80, right hemisphere 52.1
1818 Male, age 74, unknown 51.4
Nucleus accumbens
nTPM: 44.5
2698 Female, age 72, unknown 47.8
2732 Male, age 80, right hemisphere 46.2
1806 Female, age 85, left hemisphere 46.1
2391 Female, age 94, left hemisphere 46.1
2286 Male, age 75, left hemisphere 45.4
1783 Male, age 74, unknown 42.2
2824 Male, age 61, right hemisphere 41.1
1856 Female, age 91, right hemisphere 40.8
Nucleus basalis of Meynert
nTPM: 48.3
2569 Male, age 61, both hemispheres 59.5
2484 Female, age 94, left hemisphere 46.3
2821 Male, age 75, both hemispheres 44.4
2393 Male, age 80, right hemisphere 42.9
Nucleus of the diagonal band
nTPM: 42.1
1979 Male, age 74, unknown 45.4
1812 Female, age 91, both hemispheres 45.1
2775 Male, age 80, right hemisphere 40.7
2195 Female, age 85, both hemispheres 40.2
2029 Male, age 61, right hemisphere 38.9
Olfactory tubercle
nTPM: 39.4
1846 Male, age 80, right hemisphere 41.3
2856 Male, age 75, right hemisphere 39.3
2487 Female, age 94, left hemisphere 39.2
1998 Female, age 91, both hemispheres 37.7
Putamen
nTPM: 43.1
2647 Male, age 75, left hemisphere 47.5
2482 Female, age 94, left hemisphere 44.4
2489 Female, age 72, unknown 43.2
1829 Male, age 74, unknown 43.1
1838 Male, age 80, right hemisphere 41.8
1937 Female, age 91, right hemisphere 41.5
2466 Female, age 79, unknown 39.9
Septal nuclei
nTPM: 41.9
2199 Male, age 80, right hemisphere 46.4
2394 Male, age 61, left hemisphere 45.5
2031 Female, age 72, unknown 42.0
2009 Female, age 91, both hemispheres 41.5
2059 Female, age 85, both hemispheres 39.6
2629 Female, age 94, right hemisphere 39.6
1960 Male, age 74, unknown 39.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.6
Samples: 246

Max nTPM: 70.8
Min nTPM: 13.3
Std nTPM: 9.1
Median nTPM: 33.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 70.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 70.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 68.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 61.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 60.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 55.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 54.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 53.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 52.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 50.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 50.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.3
Samples: 246

Max nTPM: 68.4
Min nTPM: 8.2
Std nTPM: 8.9
Median nTPM: 31.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 68.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 67.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 66.4
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 63.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 63.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 58.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 55.6
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 55.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 55.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 53.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 53.3
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Brain - Putamen (basal ganglia)
Average nTPM: 38.6
Samples: 205

Max nTPM: 89.0
Min nTPM: 14.2
Std nTPM: 12.9
Median nTPM: 36.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 89.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 86.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 75.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 72.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 71.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 71.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 67.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 64.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 64.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 62.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 62.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.0
FF:10164-103B2 76 years, female 25.0
Globus pallidus
Scaled Tags Per Million: 36.2
FF:10161-103A8 76 years, female 51.1
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 14.5
FF:10037-101F1 23-56 years, mixed 14.5
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Caudate
nTPM: 10.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 10.0
Sample C Male 10.9
Sample D Male 10.8
Putamen
nTPM: 11.9
Samples: 4

Max nTPM: 14.7
Min nTPM: 9.2
Sample A Female 14.7
Sample B Female 9.2
Sample C Male 11.5
Sample D Male 12.2
Septum
nTPM: 12.3
Samples: 4

Max nTPM: 15.1
Min nTPM: 11.0
Sample A Female 11.7
Sample B Female 11.0
Sample C Male 15.1
Sample D Male 11.4
Ventral pallidum
nTPM: 12.2
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.3
Sample A Female 10.6
Sample B Female 10.3
Sample C Male 14.9
Sample D Male 12.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.6
Samples: 4

Max nTPM: 19.9
Min nTPM: 15.2
Sample A Male 16.6
Sample B Male 15.2
Sample C Female 19.9
Sample D Female 18.7
Septum
nTPM: 13.9
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.2
Sample A Male 12.5
Sample B Male 12.2
Sample C Female 14.5
Sample D Female 16.2
Ventral forebrain
nTPM: 14.6
Samples: 4

Max nTPM: 17.0
Min nTPM: 12.4
Sample A Male 14.2
Sample B Male 14.7
Sample C Female 12.4
Sample D Female 17.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.1
68269066 Antisense, RP_041208_01_H05, Mouse strain C57BL/6J (56 days, male) 11.1
Pallidum
Expression energy: 10.5
68269066 Antisense, RP_041208_01_H05, Mouse strain C57BL/6J (56 days, male) 10.5

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