BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:30.1 nTPM
HPA:30.1 nTPM
GTEx:31.7 nTPM
FANTOM5:8.4 Scaled Tags Per Million
Pig:50.0 nTPM
Mouse:60.2 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036231Antibody HPA036232
Glial cells MediumMedium
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 28.4
2289 Male, age 61, right hemisphere 30.3
2288 Male, age 75, left hemisphere 29.7
1781 Male, age 74, unknown 29.6
2846 Female, age 79, unknown 29.2
2290 Female, age 72, unknown 27.6
1857 Female, age 85, left hemisphere 27.3
1854 Male, age 80, left hemisphere 27.0
2481 Female, age 94, left hemisphere 26.8
Claustrum
nTPM: 30.1
2568 Male, age 61, both hemispheres 33.3
2491 Male, age 75, both hemispheres 31.7
2284 Female, age 91, both hemispheres 31.6
2645 Female, age 72, unknown 30.8
2198 Male, age 80, both hemispheres 30.5
1956 Male, age 74, unknown 29.3
2292 Female, age 85, both hemispheres 28.8
2196 Female, age 79, unknown 27.6
2392 Female, age 94, both hemispheres 27.0
Globus pallidus, externus
nTPM: 29.9
2772 Female, age 79, unknown 32.4
2646 Male, age 61, right hemisphere 31.8
1996 Male, age 80, right hemisphere 29.0
2567 Female, age 72, unknown 28.5
2395 Male, age 75, both hemispheres 27.6
Globus pallidus, internus
nTPM: 29.2
1818 Male, age 74, unknown 30.8
2287 Male, age 75, right hemisphere 30.6
2778 Female, age 91, both hemispheres 30.3
2566 Female, age 72, unknown 29.5
2037 Male, age 80, right hemisphere 29.3
2483 Female, age 94, right hemisphere 28.1
2111 Female, age 85, right hemisphere 25.9
Nucleus accumbens
nTPM: 27.7
1856 Female, age 91, right hemisphere 29.7
1783 Male, age 74, unknown 28.3
2286 Male, age 75, left hemisphere 28.3
2824 Male, age 61, right hemisphere 28.3
1806 Female, age 85, left hemisphere 27.7
2698 Female, age 72, unknown 27.1
2732 Male, age 80, right hemisphere 26.5
2391 Female, age 94, left hemisphere 25.7
Nucleus basalis of Meynert
nTPM: 28.7
2569 Male, age 61, both hemispheres 32.4
2484 Female, age 94, left hemisphere 28.3
2821 Male, age 75, both hemispheres 27.7
2393 Male, age 80, right hemisphere 26.5
Nucleus of the diagonal band
nTPM: 29.7
2775 Male, age 80, right hemisphere 30.2
1812 Female, age 91, both hemispheres 30.1
2029 Male, age 61, right hemisphere 30.1
2195 Female, age 85, both hemispheres 29.6
1979 Male, age 74, unknown 28.4
Olfactory tubercle
nTPM: 29.8
1998 Female, age 91, both hemispheres 32.1
2856 Male, age 75, right hemisphere 29.5
2487 Female, age 94, left hemisphere 29.1
1846 Male, age 80, right hemisphere 28.5
Putamen
nTPM: 28.7
2647 Male, age 75, left hemisphere 30.5
1937 Female, age 91, right hemisphere 29.5
1838 Male, age 80, right hemisphere 29.0
2466 Female, age 79, unknown 29.0
1829 Male, age 74, unknown 28.6
2489 Female, age 72, unknown 27.2
2482 Female, age 94, left hemisphere 26.7
Septal nuclei
nTPM: 29.3
1960 Male, age 74, unknown 32.5
2031 Female, age 72, unknown 31.0
2059 Female, age 85, both hemispheres 29.8
2009 Female, age 91, both hemispheres 29.5
2394 Male, age 61, left hemisphere 29.5
2629 Female, age 94, right hemisphere 26.7
2199 Male, age 80, right hemisphere 25.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.9
Samples: 246

Max nTPM: 62.6
Min nTPM: 16.3
Std nTPM: 5.7
Median nTPM: 28.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 62.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 45.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 42.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 42.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 42.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 40.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 40.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 40.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 40.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 39.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 39.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.9
Samples: 246

Max nTPM: 48.4
Min nTPM: 15.9
Std nTPM: 5.6
Median nTPM: 28.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 48.4
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 48.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 48.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 45.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 41.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 41.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 41.1
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 40.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 40.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 39.9
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 39.5
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Brain - Putamen (basal ganglia)
Average nTPM: 31.7
Samples: 205

Max nTPM: 61.7
Min nTPM: 18.6
Std nTPM: 6.2
Median nTPM: 31.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 61.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 54.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 49.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 48.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 44.1
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 42.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 42.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 42.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 42.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 41.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 41.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.4
FF:10164-103B2 76 years, female 8.4
Globus pallidus
Scaled Tags Per Million: 7.3
FF:10175-103C4 60 years, female 7.8
FF:10161-103A8 76 years, female 6.8
Nucleus accumbens
Scaled Tags Per Million: 8.2
FF:10037-101F1 23-56 years, mixed 8.2
Putamen
Scaled Tags Per Million: 7.1
FF:10176-103C5 60 years, female 7.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.0
Pig sample Sample description nTPM
Caudate
nTPM: 45.5
Samples: 4

Max nTPM: 52.6
Min nTPM: 34.7
Sample A Female 34.7
Sample B Female 52.4
Sample C Male 52.6
Sample D Male 42.3
Putamen
nTPM: 50.1
Samples: 4

Max nTPM: 66.6
Min nTPM: 39.2
Sample A Female 39.2
Sample B Female 41.4
Sample C Male 66.6
Sample D Male 53.0
Septum
nTPM: 44.4
Samples: 4

Max nTPM: 49.2
Min nTPM: 41.1
Sample A Female 41.1
Sample B Female 41.1
Sample C Male 46.1
Sample D Male 49.2
Ventral pallidum
nTPM: 43.6
Samples: 4

Max nTPM: 55.9
Min nTPM: 35.0
Sample A Female 35.0
Sample B Female 46.3
Sample C Male 55.9
Sample D Male 37.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.5
Samples: 4

Max nTPM: 59.6
Min nTPM: 46.8
Sample A Male 48.5
Sample B Male 59.6
Sample C Female 46.8
Sample D Female 47.1
Septum
nTPM: 59.6
Samples: 4

Max nTPM: 63.7
Min nTPM: 57.5
Sample A Male 63.7
Sample B Male 58.1
Sample C Female 59.0
Sample D Female 57.5
Ventral forebrain
nTPM: 60.2
Samples: 4

Max nTPM: 63.6
Min nTPM: 56.0
Sample A Male 60.1
Sample B Male 56.0
Sample C Female 63.6
Sample D Female 61.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69549194 Antisense, RP_050120_01_H11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69549194 Antisense, RP_050120_01_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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