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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:54.0 nTPM
HPA:54.0 nTPM
GTEx:82.4 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:7.1 nTPM
Mouse:137.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 54.0
Sample id Sample description nTPM
Amygdala
nTPM: 54.0
2514 Male, age 75, right hemisphere 55.6
2695 Female, age 67, right hemisphere 54.8
1987 Female, age 91, left hemisphere 53.6
2814 Male, age 76, right hemisphere 53.5
2517 Female, age 94, left hemisphere 52.5
Basal amygdala
nTPM: 53.2
2609 Male, age 75, right hemisphere 56.8
1955 Male, age 76, both hemispheres 54.4
2243 Female, age 91, right hemisphere 54.1
2110 Male, age 80, left hemisphere 53.3
2827 Female, age 67, right hemisphere 50.5
2685 Female, age 94, left hemisphere 50.3
Central amygdala
nTPM: 53.1
2826 Female, age 94, left hemisphere 55.6
2239 Male, age 80, left hemisphere 54.4
1905 Male, age 76, both hemispheres 53.2
2515 Male, age 75, right hemisphere 51.7
2701 Female, age 91, right hemisphere 50.7
Corticomedial amygdala
nTPM: 52.9
2829 Male, age 80, left hemisphere 54.3
2429 Female, age 94, left hemisphere 54.0
2240 Male, age 76, both hemispheres 53.5
2242 Female, age 91, right hemisphere 52.9
2428 Male, age 75, right hemisphere 52.2
2535 Female, age 67, right hemisphere 50.6
Lateral amygdala
nTPM: 52.7
2534 Female, age 94, left hemisphere 57.5
2516 Male, age 75, right hemisphere 54.7
1883 Male, age 76, both hemispheres 53.8
2255 Female, age 91, right hemisphere 50.4
2256 Male, age 80, left hemisphere 49.9
2830 Female, age 67, right hemisphere 49.8
Stria terminalis, bed nucleus
nTPM: 53.7
2486 Female, age 94, both hemispheres 54.5
1974 Female, age 91, both hemispheres 54.2
2201 Male, age 74, unknown 52.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 82.4
Samples: 152

Max nTPM: 207.0
Min nTPM: 31.3
Std nTPM: 27.6
Median nTPM: 79.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 207.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 205.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 199.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 178.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 158.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 152.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 131.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 127.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 126.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 124.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 118.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 118.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 110.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 109.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 107.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 105.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 105.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 103.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 102.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 100.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 100.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 99.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 98.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 98.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 97.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 97.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 96.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 96.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 95.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 95.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 94.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 92.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 92.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 92.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 91.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 91.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 91.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 90.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 90.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 90.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 90.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 90.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 89.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 89.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 88.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 88.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 88.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 86.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 86.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 85.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 85.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 85.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 85.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 84.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 84.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 84.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 83.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 83.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 83.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 83.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 82.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 82.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 82.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 82.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 82.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 82.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 81.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 81.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 81.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 81.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 81.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 80.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 79.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 79.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 79.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 78.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 77.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 77.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 77.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 76.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 76.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 75.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 75.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 75.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 74.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 74.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 73.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 73.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 73.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 72.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 72.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 72.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 72.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 72.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 71.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 71.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 71.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 70.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 70.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 70.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 70.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 70.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 69.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 69.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 67.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 67.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 67.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 67.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 66.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 66.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 66.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 65.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 65.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 65.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 64.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 64.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 63.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 63.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 63.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 63.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 62.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 62.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 62.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 62.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 61.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 60.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 59.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 59.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 59.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 58.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 56.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 52.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 52.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 52.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 51.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 51.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 50.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 50.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 50.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 47.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 46.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 44.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 39.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 31.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 15.8
FF:10151-102I7 76 years, female 15.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.1
Pig sample Sample description nTPM
Amygdala
nTPM: 7.1
Samples: 4

Max nTPM: 10.0
Min nTPM: 5.6
Sample A Female 10.0
Sample B Female 6.9
Sample C Male 5.7
Sample D Male 5.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 137.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.9
Samples: 4

Max nTPM: 151.1
Min nTPM: 128.3
Sample A Male 141.0
Sample B Male 151.1
Sample C Female 128.3
Sample D Female 131.1

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