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ATP5IF1
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  • ATP5IF1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:98.4 nTPM
HPA:98.4 nTPM
GTEx:420.5 nTPM
FANTOM5:621.0 Scaled Tags Per Million
Pig:108.9 nTPM
Mouse:711.1 nTPM
Allen mouse:14.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 98.4
Sample id Sample description nTPM
Amygdala
nTPM: 92.8
2814 Male, age 76, right hemisphere 96.3
1987 Female, age 91, left hemisphere 92.9
2517 Female, age 94, left hemisphere 91.9
2514 Male, age 75, right hemisphere 91.6
2695 Female, age 67, right hemisphere 91.1
Basal amygdala
nTPM: 95.1
2243 Female, age 91, right hemisphere 102.4
1955 Male, age 76, both hemispheres 96.1
2110 Male, age 80, left hemisphere 94.6
2685 Female, age 94, left hemisphere 94.2
2609 Male, age 75, right hemisphere 93.1
2827 Female, age 67, right hemisphere 90.3
Central amygdala
nTPM: 94.1
1905 Male, age 76, both hemispheres 97.1
2701 Female, age 91, right hemisphere 96.6
2239 Male, age 80, left hemisphere 95.7
2826 Female, age 94, left hemisphere 90.9
2515 Male, age 75, right hemisphere 90.4
Corticomedial amygdala
nTPM: 96.1
2242 Female, age 91, right hemisphere 98.3
2829 Male, age 80, left hemisphere 98.2
2429 Female, age 94, left hemisphere 96.5
2240 Male, age 76, both hemispheres 95.9
2535 Female, age 67, right hemisphere 95.1
2428 Male, age 75, right hemisphere 92.7
Lateral amygdala
nTPM: 91.3
1883 Male, age 76, both hemispheres 97.7
2255 Female, age 91, right hemisphere 92.6
2534 Female, age 94, left hemisphere 91.3
2516 Male, age 75, right hemisphere 90.8
2256 Male, age 80, left hemisphere 87.8
2830 Female, age 67, right hemisphere 87.6
Stria terminalis, bed nucleus
nTPM: 98.4
1974 Female, age 91, both hemispheres 102.2
2201 Male, age 74, unknown 96.8
2486 Female, age 94, both hemispheres 96.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 420.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 420.5
Samples: 152

Max nTPM: 1463.6
Min nTPM: 161.5
Std nTPM: 199.5
Median nTPM: 385.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1463.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1293.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1161.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1017.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 964.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 814.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 775.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 713.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 702.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 676.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 638.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 638.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 636.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 635.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 632.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 627.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 619.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 619.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 601.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 596.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 595.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 583.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 576.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 573.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 568.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 566.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 565.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 561.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 553.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 553.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 547.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 545.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 532.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 524.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 523.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 516.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 515.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 512.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 500.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 498.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 493.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 485.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 484.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 479.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 476.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 475.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 474.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 470.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 468.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 465.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 461.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 458.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 455.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 446.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 443.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 439.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 437.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 433.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 429.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 429.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 422.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 420.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 420.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 414.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 411.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 410.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 407.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 405.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 404.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 403.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 400.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 399.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 394.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 389.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 387.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 385.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 384.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 381.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 380.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 375.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 370.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 364.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 357.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 357.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 356.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 355.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 353.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 352.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 351.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 350.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 348.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 343.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 336.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 330.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 330.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 328.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 327.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 324.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 323.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 319.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 318.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 317.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 316.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 311.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 310.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 306.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 303.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 300.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 300.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 296.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 296.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 294.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 282.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 282.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 277.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 277.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 275.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 272.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 272.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 272.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 270.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 268.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 266.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 266.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 262.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 257.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 254.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 252.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 250.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 243.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 242.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 240.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 231.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 230.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 228.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 227.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 224.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 221.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 220.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 218.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 214.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 211.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 208.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 206.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 205.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 200.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 190.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 190.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 181.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 181.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 174.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 161.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 621.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 621.0
FF:10151-102I7 76 years, female 621.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.9
Pig sample Sample description nTPM
Amygdala
nTPM: 108.9
Samples: 4

Max nTPM: 156.4
Min nTPM: 82.1
Sample A Female 156.4
Sample B Female 108.8
Sample C Male 88.1
Sample D Male 82.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 711.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 711.2
Samples: 4

Max nTPM: 739.2
Min nTPM: 684.8
Sample A Male 684.8
Sample B Male 739.2
Sample C Female 727.4
Sample D Female 693.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.3
75774682 Antisense, RP_060530_01_D07, Mouse strain C57BL/6J (56 days, male) 16.0
67978746 Antisense, RP_040923_01_G06, Mouse strain C57BL/6J (56 days, male) 12.6

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