MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:96.8 nTPM
HPA:96.8 nTPM
GTEx:293.8 nTPM
FANTOM5:222.3 Scaled Tags Per Million
Pig:204.3 nTPM
Mouse:449.1 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.2
1870 Female, age 42, unknown 95.5
2219 Male, age 76, both hemispheres 94.6
2411 Female, age 72, unknown 93.6
1827 Male, age 72, unknown 93.0
2019 Male, age 18, unknown 90.7
1833 Male, age 53, unknown 90.3
2666 Male, age 74, left hemisphere 89.6
1830 Male, age 51, unknown 89.5
2828 Female, age 72, unknown 88.2
2586 Male, age 75, left hemisphere 87.5
Dorsal raphe nucleus
nTPM: 91.9
1828 Male, age 53, unknown 94.3
2047 Male, age 72, unknown 93.1
2750 Male, age 76, both hemispheres 92.6
2298 Female, age 72, unknown 92.2
2016 Female, age 72, unknown 87.3
Inferior colliculus
nTPM: 94.5
2849 Male, age 72, unknown 96.5
1890 Male, age 53, unknown 95.1
2097 Female, age 72, unknown 93.9
1848 Female, age 42, unknown 92.4
Median raphe nucleus
nTPM: 96.6
2220 Male, age 76, midline 96.6
Pedunculopontine tegmental nucleus
nTPM: 96.8
1921 Female, age 85, both hemispheres 97.5
2338 Male, age 61, both hemispheres 97.1
2334 Male, age 80, both hemispheres 95.9
Periaquaductal grey, anterior
nTPM: 92.4
2502 Female, age 75, unknown 93.3
1795 Male, age 51, unknown 92.8
1947 Male, age 18, unknown 91.0
Periaquaductal grey, dorsal
nTPM: 91.2
2850 Male, age 76, both hemispheres 93.4
1840 Male, age 53, unknown 93.0
1831 Male, age 72, unknown 89.7
2464 Female, age 72, unknown 88.8
Periaquaductal grey, lateral
nTPM: 90.8
2140 Male, age 76, both hemispheres 91.5
2272 Male, age 74, both hemispheres 91.3
2053 Male, age 18, unknown 89.8
Pretectal area
nTPM: 93.3
2007 Male, age 72, unknown 97.0
1816 Male, age 51, unknown 96.6
1944 Female, age 72, unknown 96.4
1817 Female, age 42, unknown 95.5
2667 Female, age 75, unknown 95.1
2224 Female, age 72, unknown 92.7
2825 Male, age 18, unknown 91.8
1815 Male, age 53, unknown 91.7
2407 Male, age 75, both hemispheres 91.6
2273 Male, age 74, both hemispheres 90.0
2316 Male, age 76, right hemisphere 88.1
Red nucleus
nTPM: 92.1
2725 Female, age 75, unknown 95.7
1821 Female, age 72, unknown 94.7
1954 Female, age 42, unknown 92.7
2785 Male, age 18, unknown 92.5
1865 Male, age 51, unknown 92.1
2227 Male, age 72, unknown 92.1
2588 Male, age 74, left hemisphere 92.1
2769 Male, age 72, unknown 91.5
2503 Female, age 72, unknown 90.9
2823 Male, age 76, right hemisphere 90.5
2584 Male, age 75, left hemisphere 90.2
1904 Male, age 53, unknown 90.0
Substantia nigra
nTPM: 93.6
1916 Female, age 42, unknown 98.9
1889 Female, age 72, unknown 98.5
2699 Male, age 18, unknown 96.7
1851 Male, age 51, unknown 95.2
1941 Male, age 53, unknown 94.6
2665 Male, age 74, both hemispheres 92.4
2409 Female, age 72, unknown 92.1
2241 Male, age 72, unknown 91.2
2590 Female, age 75, unknown 89.4
2583 Male, age 75, right hemisphere 87.0
Superior colliculus
nTPM: 91.1
1895 Male, age 76, right hemisphere 96.2
2587 Male, age 74, left hemisphere 94.0
1796 Male, age 53, unknown 92.9
2087 Female, age 72, unknown 92.4
2261 Male, age 18, unknown 91.5
1913 Female, age 42, unknown 89.7
1839 Male, age 51, unknown 89.1
2668 Female, age 75, unknown 89.1
2664 Male, age 75, both hemispheres 88.9
1995 Male, age 72, unknown 87.3
Ventral tegmental area
nTPM: 93.9
2218 Male, age 76, both hemispheres 97.1
2410 Female, age 72, unknown 95.8
1915 Female, age 42, unknown 94.9
2223 Female, age 72, unknown 93.8
1942 Male, age 51, unknown 92.0
2021 Male, age 53, unknown 89.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 293.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 293.8
Samples: 139

Max nTPM: 619.3
Min nTPM: 133.3
Std nTPM: 104.1
Median nTPM: 268.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 619.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 612.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 592.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 580.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 527.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 473.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 472.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 467.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 466.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 463.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 462.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 222.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 222.3
FF:10158-103A5 76 years, female 222.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 204.3
Pig sample Sample description nTPM
Midbrain
nTPM: 181.1
Samples: 4

Max nTPM: 198.4
Min nTPM: 162.2
Sample A Female 162.2
Sample B Female 176.7
Sample C Male 198.4
Sample D Male 187.0
Periaqueductal gray
nTPM: 135.1
Samples: 3

Max nTPM: 158.2
Min nTPM: 116.2
Sample B Female 130.8
Sample C Male 158.2
Sample D Male 116.2
Substantia nigra
nTPM: 195.1
Samples: 4

Max nTPM: 313.1
Min nTPM: 101.3
Sample A Female 313.1
Sample B Female 155.4
Sample C Male 210.6
Sample D Male 101.3
Superior colliculi
nTPM: 204.3
Samples: 4

Max nTPM: 251.4
Min nTPM: 157.6
Sample A Female 245.1
Sample B Female 163.2
Sample C Male 251.4
Sample D Male 157.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 449.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 449.1
Samples: 4

Max nTPM: 501.3
Min nTPM: 403.7
Sample A Male 501.3
Sample B Male 423.3
Sample C Female 403.7
Sample D Female 468.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
75774682 Antisense, RP_060530_01_D07, Mouse strain C57BL/6J (56 days, male) 10.9
67978746 Antisense, RP_040923_01_G06, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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