MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA:24.0 nTPM
GTEx:40.4 nTPM
FANTOM5:321.8 Scaled Tags Per Million
Pig:127.4 nTPM
Mouse:81.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.8
2666 Male, age 74, left hemisphere 20.3
1833 Male, age 53, unknown 15.0
1870 Female, age 42, unknown 14.4
1830 Male, age 51, unknown 14.0
1827 Male, age 72, unknown 12.7
2219 Male, age 76, both hemispheres 12.1
2586 Male, age 75, left hemisphere 11.7
2828 Female, age 72, unknown 11.3
2019 Male, age 18, unknown 10.2
2411 Female, age 72, unknown 6.2
Dorsal raphe nucleus
nTPM: 8.9
2750 Male, age 76, both hemispheres 12.7
1828 Male, age 53, unknown 10.3
2016 Female, age 72, unknown 8.1
2047 Male, age 72, unknown 6.9
2298 Female, age 72, unknown 6.7
Inferior colliculus
nTPM: 10.3
2849 Male, age 72, unknown 16.1
1848 Female, age 42, unknown 14.1
1890 Male, age 53, unknown 5.7
2097 Female, age 72, unknown 5.4
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Pedunculopontine tegmental nucleus
nTPM: 12.4
2338 Male, age 61, both hemispheres 16.3
2334 Male, age 80, both hemispheres 13.7
1921 Female, age 85, both hemispheres 7.2
Periaquaductal grey, anterior
nTPM: 13.1
1947 Male, age 18, unknown 17.4
2502 Female, age 75, unknown 12.8
1795 Male, age 51, unknown 9.3
Periaquaductal grey, dorsal
nTPM: 11.5
2850 Male, age 76, both hemispheres 21.9
1840 Male, age 53, unknown 11.5
1831 Male, age 72, unknown 11.2
2464 Female, age 72, unknown 1.5
Periaquaductal grey, lateral
nTPM: 13.3
2140 Male, age 76, both hemispheres 20.6
2053 Male, age 18, unknown 12.2
2272 Male, age 74, both hemispheres 7.1
Pretectal area
nTPM: 12.9
2407 Male, age 75, both hemispheres 22.9
1816 Male, age 51, unknown 15.2
2667 Female, age 75, unknown 14.8
2316 Male, age 76, right hemisphere 14.5
1944 Female, age 72, unknown 14.1
2007 Male, age 72, unknown 13.8
1817 Female, age 42, unknown 12.3
1815 Male, age 53, unknown 10.6
2825 Male, age 18, unknown 9.9
2224 Female, age 72, unknown 7.0
2273 Male, age 74, both hemispheres 6.8
Red nucleus
nTPM: 13.9
2725 Female, age 75, unknown 19.9
2503 Female, age 72, unknown 18.7
1821 Female, age 72, unknown 16.9
1904 Male, age 53, unknown 15.9
1954 Female, age 42, unknown 15.9
2584 Male, age 75, left hemisphere 14.8
1865 Male, age 51, unknown 13.7
2227 Male, age 72, unknown 11.8
2769 Male, age 72, unknown 10.4
2823 Male, age 76, right hemisphere 9.9
2785 Male, age 18, unknown 9.7
2588 Male, age 74, left hemisphere 9.6
Substantia nigra
nTPM: 9.9
1916 Female, age 42, unknown 14.5
2699 Male, age 18, unknown 14.3
1889 Female, age 72, unknown 12.7
2665 Male, age 74, both hemispheres 10.7
1941 Male, age 53, unknown 9.3
1851 Male, age 51, unknown 9.0
2409 Female, age 72, unknown 7.9
2583 Male, age 75, right hemisphere 7.8
2241 Male, age 72, unknown 7.5
2590 Female, age 75, unknown 5.3
Superior colliculus
nTPM: 11.9
1839 Male, age 51, unknown 15.5
2664 Male, age 75, both hemispheres 14.4
1995 Male, age 72, unknown 13.8
1913 Female, age 42, unknown 13.4
2261 Male, age 18, unknown 12.9
1796 Male, age 53, unknown 11.8
1895 Male, age 76, right hemisphere 10.8
2668 Female, age 75, unknown 10.1
2087 Female, age 72, unknown 9.2
2587 Male, age 74, left hemisphere 7.5
Ventral tegmental area
nTPM: 12.2
2223 Female, age 72, unknown 23.2
1915 Female, age 42, unknown 15.1
2218 Male, age 76, both hemispheres 13.5
2021 Male, age 53, unknown 11.7
1942 Male, age 51, unknown 8.8
2410 Female, age 72, unknown 1.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.4
Samples: 139

Max nTPM: 80.4
Min nTPM: 18.5
Std nTPM: 12.6
Median nTPM: 37.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 80.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 78.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 73.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 73.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 73.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 66.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 64.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 64.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 60.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 60.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 321.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 321.8
FF:10158-103A5 76 years, female 321.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 127.4
Pig sample Sample description nTPM
Midbrain
nTPM: 113.2
Samples: 4

Max nTPM: 123.8
Min nTPM: 101.0
Sample A Female 122.6
Sample B Female 123.8
Sample C Male 105.2
Sample D Male 101.0
Periaqueductal gray
nTPM: 127.4
Samples: 3

Max nTPM: 134.3
Min nTPM: 118.5
Sample B Female 134.3
Sample C Male 118.5
Sample D Male 129.4
Substantia nigra
nTPM: 106.4
Samples: 4

Max nTPM: 114.3
Min nTPM: 100.0
Sample A Female 103.2
Sample B Female 114.3
Sample C Male 100.0
Sample D Male 108.0
Superior colliculi
nTPM: 104.3
Samples: 4

Max nTPM: 114.3
Min nTPM: 90.4
Sample A Female 90.4
Sample B Female 114.3
Sample C Male 103.3
Sample D Male 109.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.7
Samples: 4

Max nTPM: 89.7
Min nTPM: 72.5
Sample A Male 80.0
Sample B Male 89.7
Sample C Female 84.7
Sample D Female 72.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71325420 Antisense, RP_050825_02_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.