BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.3 nTPM
HPA:39.3 nTPM
GTEx:51.8 nTPM
FANTOM5:182.7 Scaled Tags Per Million
Pig:100.9 nTPM
Mouse:231.9 nTPM
Allen mouse:12.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035419
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.2
1857 Female, age 85, left hemisphere 33.7
2290 Female, age 72, unknown 33.7
2846 Female, age 79, unknown 31.7
1854 Male, age 80, left hemisphere 31.3
1781 Male, age 74, unknown 28.6
2288 Male, age 75, left hemisphere 24.0
2289 Male, age 61, right hemisphere 21.9
2481 Female, age 94, left hemisphere 12.8
Claustrum
nTPM: 28.1
2198 Male, age 80, both hemispheres 35.7
2491 Male, age 75, both hemispheres 34.2
2568 Male, age 61, both hemispheres 32.9
2284 Female, age 91, both hemispheres 32.2
2392 Female, age 94, both hemispheres 27.3
2196 Female, age 79, unknown 26.6
2645 Female, age 72, unknown 25.6
1956 Male, age 74, unknown 23.9
2292 Female, age 85, both hemispheres 14.8
Globus pallidus, externus
nTPM: 1.6
2395 Male, age 75, both hemispheres 5.3
2646 Male, age 61, right hemisphere 1.5
2772 Female, age 79, unknown 1.4
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
Globus pallidus, internus
nTPM: 1.5
2483 Female, age 94, right hemisphere 7.0
2287 Male, age 75, right hemisphere 4.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 29.3
1856 Female, age 91, right hemisphere 46.3
2824 Male, age 61, right hemisphere 43.9
1783 Male, age 74, unknown 39.8
1806 Female, age 85, left hemisphere 32.4
2698 Female, age 72, unknown 30.0
2286 Male, age 75, left hemisphere 19.9
2732 Male, age 80, right hemisphere 12.6
2391 Female, age 94, left hemisphere 9.8
Nucleus basalis of Meynert
nTPM: 14.9
2393 Male, age 80, right hemisphere 26.0
2484 Female, age 94, left hemisphere 17.9
2821 Male, age 75, both hemispheres 12.8
2569 Male, age 61, both hemispheres 2.9
Nucleus of the diagonal band
nTPM: 39.3
2775 Male, age 80, right hemisphere 48.4
2195 Female, age 85, both hemispheres 42.3
1812 Female, age 91, both hemispheres 40.4
2029 Male, age 61, right hemisphere 36.3
1979 Male, age 74, unknown 29.2
Olfactory tubercle
nTPM: 35.8
1998 Female, age 91, both hemispheres 43.5
1846 Male, age 80, right hemisphere 37.0
2487 Female, age 94, left hemisphere 35.8
2856 Male, age 75, right hemisphere 26.9
Putamen
nTPM: 25.0
1838 Male, age 80, right hemisphere 41.1
1937 Female, age 91, right hemisphere 33.0
2466 Female, age 79, unknown 30.7
1829 Male, age 74, unknown 28.2
2647 Male, age 75, left hemisphere 14.7
2482 Female, age 94, left hemisphere 13.8
2489 Female, age 72, unknown 13.5
Septal nuclei
nTPM: 27.4
1960 Male, age 74, unknown 43.0
2031 Female, age 72, unknown 38.4
2629 Female, age 94, right hemisphere 32.7
2009 Female, age 91, both hemispheres 32.3
2059 Female, age 85, both hemispheres 23.9
2199 Male, age 80, right hemisphere 10.7
2394 Male, age 61, left hemisphere 10.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.4
Samples: 246

Max nTPM: 94.4
Min nTPM: 10.5
Std nTPM: 16.8
Median nTPM: 41.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 94.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 88.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 82.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 80.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 80.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 78.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 77.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 76.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 74.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 72.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 72.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.8
Samples: 246

Max nTPM: 105.9
Min nTPM: 8.7
Std nTPM: 20.5
Median nTPM: 53.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 105.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 99.4
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 97.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 89.8
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 88.0
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 86.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 86.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 86.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 85.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 84.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 83.2
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Brain - Putamen (basal ganglia)
Average nTPM: 39.3
Samples: 205

Max nTPM: 86.7
Min nTPM: 8.6
Std nTPM: 15.9
Median nTPM: 38.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 86.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 72.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 72.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 66.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 66.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 66.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 66.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 66.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 65.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 65.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 64.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 182.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 125.6
FF:10164-103B2 76 years, female 125.6
Globus pallidus
Scaled Tags Per Million: 37.7
FF:10175-103C4 60 years, female 44.2
FF:10161-103A8 76 years, female 31.2
Nucleus accumbens
Scaled Tags Per Million: 145.4
FF:10037-101F1 23-56 years, mixed 145.4
Putamen
Scaled Tags Per Million: 182.7
FF:10176-103C5 60 years, female 182.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 100.9
Pig sample Sample description nTPM
Caudate
nTPM: 100.9
Samples: 4

Max nTPM: 117.9
Min nTPM: 86.7
Sample A Female 86.7
Sample B Female 101.8
Sample C Male 117.9
Sample D Male 97.1
Putamen
nTPM: 95.8
Samples: 4

Max nTPM: 138.5
Min nTPM: 50.4
Sample A Female 50.4
Sample B Female 91.1
Sample C Male 138.5
Sample D Male 103.1
Septum
nTPM: 84.4
Samples: 4

Max nTPM: 91.9
Min nTPM: 74.8
Sample A Female 91.9
Sample B Female 83.8
Sample C Male 74.8
Sample D Male 87.1
Ventral pallidum
nTPM: 81.9
Samples: 4

Max nTPM: 99.8
Min nTPM: 71.4
Sample A Female 99.8
Sample B Female 74.2
Sample C Male 71.4
Sample D Male 82.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 231.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 231.9
Samples: 4

Max nTPM: 248.8
Min nTPM: 216.7
Sample A Male 248.8
Sample B Male 236.2
Sample C Female 216.7
Sample D Female 225.8
Septum
nTPM: 126.4
Samples: 4

Max nTPM: 131.1
Min nTPM: 117.5
Sample A Male 130.5
Sample B Male 131.1
Sample C Female 117.5
Sample D Female 126.6
Ventral forebrain
nTPM: 158.7
Samples: 4

Max nTPM: 165.5
Min nTPM: 149.6
Sample A Male 163.5
Sample B Male 156.2
Sample C Female 149.6
Sample D Female 165.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.3
70231011 Antisense, RP_050526_01_A03, Mouse strain C57BL/6J (56 days, male) 12.3
Pallidum
Expression energy: 6.2
70231011 Antisense, RP_050526_01_A03, Mouse strain C57BL/6J (56 days, male) 6.2

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The Human Protein Atlas

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