BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.6 nTPM
HPA:45.6 nTPM
GTEx:109.7 nTPM
FANTOM5:101.9 Scaled Tags Per Million
Pig:44.1 nTPM
Mouse:19.3 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA042596Antibody HPA048072
Glial cells Not detectedMedium
Neuronal cells LowMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.1
2290 Female, age 72, unknown 50.1
2846 Female, age 79, unknown 47.6
1857 Female, age 85, left hemisphere 47.4
2481 Female, age 94, left hemisphere 45.8
1781 Male, age 74, unknown 43.5
2288 Male, age 75, left hemisphere 42.6
1854 Male, age 80, left hemisphere 42.2
2289 Male, age 61, right hemisphere 41.6
Claustrum
nTPM: 42.5
2568 Male, age 61, both hemispheres 49.7
2284 Female, age 91, both hemispheres 44.8
2198 Male, age 80, both hemispheres 44.7
2645 Female, age 72, unknown 44.3
2491 Male, age 75, both hemispheres 43.1
1956 Male, age 74, unknown 40.3
2196 Female, age 79, unknown 40.1
2292 Female, age 85, both hemispheres 39.9
2392 Female, age 94, both hemispheres 35.8
Globus pallidus, externus
nTPM: 45.1
2646 Male, age 61, right hemisphere 54.0
2395 Male, age 75, both hemispheres 46.9
2567 Female, age 72, unknown 44.1
1996 Male, age 80, right hemisphere 42.0
2772 Female, age 79, unknown 38.2
Globus pallidus, internus
nTPM: 41.6
2287 Male, age 75, right hemisphere 47.5
2483 Female, age 94, right hemisphere 46.1
2566 Female, age 72, unknown 44.3
2037 Male, age 80, right hemisphere 42.0
1818 Male, age 74, unknown 38.9
2778 Female, age 91, both hemispheres 38.1
2111 Female, age 85, right hemisphere 34.3
Nucleus accumbens
nTPM: 44.2
1806 Female, age 85, left hemisphere 49.1
1783 Male, age 74, unknown 47.1
2698 Female, age 72, unknown 47.0
1856 Female, age 91, right hemisphere 45.8
2286 Male, age 75, left hemisphere 43.7
2824 Male, age 61, right hemisphere 43.3
2391 Female, age 94, left hemisphere 38.6
2732 Male, age 80, right hemisphere 38.5
Nucleus basalis of Meynert
nTPM: 45.6
2569 Male, age 61, both hemispheres 58.6
2393 Male, age 80, right hemisphere 42.5
2484 Female, age 94, left hemisphere 41.4
2821 Male, age 75, both hemispheres 40.0
Nucleus of the diagonal band
nTPM: 45.4
2195 Female, age 85, both hemispheres 47.0
2775 Male, age 80, right hemisphere 46.1
1979 Male, age 74, unknown 45.8
1812 Female, age 91, both hemispheres 45.1
2029 Male, age 61, right hemisphere 43.1
Olfactory tubercle
nTPM: 42.3
1998 Female, age 91, both hemispheres 45.8
2856 Male, age 75, right hemisphere 43.6
1846 Male, age 80, right hemisphere 43.0
2487 Female, age 94, left hemisphere 37.0
Putamen
nTPM: 45.2
2647 Male, age 75, left hemisphere 51.7
1829 Male, age 74, unknown 47.9
1838 Male, age 80, right hemisphere 46.9
2466 Female, age 79, unknown 45.8
1937 Female, age 91, right hemisphere 43.1
2489 Female, age 72, unknown 41.1
2482 Female, age 94, left hemisphere 39.7
Septal nuclei
nTPM: 43.2
1960 Male, age 74, unknown 50.1
2031 Female, age 72, unknown 48.6
2059 Female, age 85, both hemispheres 48.6
2629 Female, age 94, right hemisphere 41.2
2009 Female, age 91, both hemispheres 39.7
2199 Male, age 80, right hemisphere 38.1
2394 Male, age 61, left hemisphere 35.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 109.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 99.7
Samples: 246

Max nTPM: 210.9
Min nTPM: 37.4
Std nTPM: 28.8
Median nTPM: 97.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 210.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 201.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 200.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 194.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 189.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 187.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 167.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 166.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 164.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 157.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 157.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 109.7
Samples: 246

Max nTPM: 216.5
Min nTPM: 31.1
Std nTPM: 29.5
Median nTPM: 109.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 216.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 194.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 175.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 174.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 173.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 172.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 169.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 169.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 167.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 165.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 162.7
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Brain - Putamen (basal ganglia)
Average nTPM: 109.6
Samples: 205

Max nTPM: 206.3
Min nTPM: 49.0
Std nTPM: 26.9
Median nTPM: 107.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 206.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 192.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 179.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 170.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 170.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 168.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 167.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 167.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 159.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 158.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 156.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 101.9
FF:10164-103B2 76 years, female 101.9
Globus pallidus
Scaled Tags Per Million: 80.9
FF:10175-103C4 60 years, female 109.7
FF:10161-103A8 76 years, female 52.2
Nucleus accumbens
Scaled Tags Per Million: 68.2
FF:10037-101F1 23-56 years, mixed 68.2
Putamen
Scaled Tags Per Million: 98.9
FF:10176-103C5 60 years, female 98.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 44.1
Pig sample Sample description nTPM
Caudate
nTPM: 44.1
Samples: 4

Max nTPM: 55.1
Min nTPM: 27.6
Sample A Female 27.6
Sample B Female 53.6
Sample C Male 55.1
Sample D Male 40.1
Putamen
nTPM: 39.6
Samples: 4

Max nTPM: 46.0
Min nTPM: 31.7
Sample A Female 40.0
Sample B Female 40.7
Sample C Male 46.0
Sample D Male 31.7
Septum
nTPM: 40.1
Samples: 4

Max nTPM: 49.2
Min nTPM: 27.5
Sample A Female 49.2
Sample B Female 41.9
Sample C Male 41.8
Sample D Male 27.5
Ventral pallidum
nTPM: 39.5
Samples: 4

Max nTPM: 48.6
Min nTPM: 30.7
Sample A Female 30.7
Sample B Female 48.6
Sample C Male 41.3
Sample D Male 37.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.0
Samples: 4

Max nTPM: 24.8
Min nTPM: 11.2
Sample A Male 15.5
Sample B Male 24.8
Sample C Female 11.2
Sample D Female 12.4
Septum
nTPM: 19.3
Samples: 4

Max nTPM: 23.4
Min nTPM: 14.4
Sample A Male 18.3
Sample B Male 21.1
Sample C Female 23.4
Sample D Female 14.4
Ventral forebrain
nTPM: 18.3
Samples: 4

Max nTPM: 25.5
Min nTPM: 14.6
Sample A Male 17.5
Sample B Male 14.6
Sample C Female 25.5
Sample D Female 15.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
71493026 Antisense, RP_050913_02_A06, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.5
71493026 Antisense, RP_050913_02_A06, Mouse strain C57BL/6J (56 days, male) 0.5

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