MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.9 nTPM
HPA:43.9 nTPM
GTEx:87.9 nTPM
FANTOM5:52.7 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:7.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
2586 Male, age 75, left hemisphere 62.0
2828 Female, age 72, unknown 46.9
1827 Male, age 72, unknown 46.8
2666 Male, age 74, left hemisphere 43.3
1870 Female, age 42, unknown 42.8
1833 Male, age 53, unknown 41.8
2411 Female, age 72, unknown 38.9
2019 Male, age 18, unknown 36.6
1830 Male, age 51, unknown 36.2
2219 Male, age 76, both hemispheres 35.3
Dorsal raphe nucleus
nTPM: 40.5
2047 Male, age 72, unknown 48.2
2298 Female, age 72, unknown 40.1
1828 Male, age 53, unknown 39.2
2016 Female, age 72, unknown 39.0
2750 Male, age 76, both hemispheres 36.1
Inferior colliculus
nTPM: 43.9
2849 Male, age 72, unknown 49.6
1848 Female, age 42, unknown 43.9
1890 Male, age 53, unknown 43.1
2097 Female, age 72, unknown 38.8
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Pedunculopontine tegmental nucleus
nTPM: 35.5
1921 Female, age 85, both hemispheres 38.2
2334 Male, age 80, both hemispheres 35.9
2338 Male, age 61, both hemispheres 32.3
Periaquaductal grey, anterior
nTPM: 40.0
1795 Male, age 51, unknown 45.1
2502 Female, age 75, unknown 38.3
1947 Male, age 18, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 42.6
1840 Male, age 53, unknown 45.7
2850 Male, age 76, both hemispheres 44.7
1831 Male, age 72, unknown 41.2
2464 Female, age 72, unknown 38.8
Periaquaductal grey, lateral
nTPM: 40.7
2053 Male, age 18, unknown 42.6
2140 Male, age 76, both hemispheres 41.6
2272 Male, age 74, both hemispheres 37.8
Pretectal area
nTPM: 42.8
2825 Male, age 18, unknown 46.6
1944 Female, age 72, unknown 46.1
1817 Female, age 42, unknown 45.6
1816 Male, age 51, unknown 45.4
2007 Male, age 72, unknown 45.4
2667 Female, age 75, unknown 44.4
1815 Male, age 53, unknown 42.2
2407 Male, age 75, both hemispheres 41.5
2273 Male, age 74, both hemispheres 39.6
2224 Female, age 72, unknown 38.4
2316 Male, age 76, right hemisphere 35.6
Red nucleus
nTPM: 41.1
2503 Female, age 72, unknown 44.0
2588 Male, age 74, left hemisphere 44.0
2769 Male, age 72, unknown 43.2
2584 Male, age 75, left hemisphere 41.7
1904 Male, age 53, unknown 41.5
2725 Female, age 75, unknown 41.3
2785 Male, age 18, unknown 40.7
2227 Male, age 72, unknown 40.4
1954 Female, age 42, unknown 39.8
2823 Male, age 76, right hemisphere 39.3
1821 Female, age 72, unknown 39.1
1865 Male, age 51, unknown 38.4
Substantia nigra
nTPM: 38.4
2583 Male, age 75, right hemisphere 46.8
2699 Male, age 18, unknown 44.5
1889 Female, age 72, unknown 43.1
2665 Male, age 74, both hemispheres 42.6
1916 Female, age 42, unknown 41.3
1851 Male, age 51, unknown 39.0
2590 Female, age 75, unknown 35.8
1941 Male, age 53, unknown 34.4
2409 Female, age 72, unknown 30.9
2241 Male, age 72, unknown 25.8
Superior colliculus
nTPM: 42.7
2664 Male, age 75, both hemispheres 52.1
1796 Male, age 53, unknown 48.1
2668 Female, age 75, unknown 44.6
1839 Male, age 51, unknown 41.7
2587 Male, age 74, left hemisphere 41.0
2087 Female, age 72, unknown 40.6
2261 Male, age 18, unknown 40.2
1913 Female, age 42, unknown 39.9
1995 Male, age 72, unknown 39.6
1895 Male, age 76, right hemisphere 39.5
Ventral tegmental area
nTPM: 39.4
1915 Female, age 42, unknown 42.9
1942 Male, age 51, unknown 40.4
2410 Female, age 72, unknown 39.3
2223 Female, age 72, unknown 39.2
2021 Male, age 53, unknown 37.7
2218 Male, age 76, both hemispheres 36.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.9
Samples: 139

Max nTPM: 209.0
Min nTPM: 31.6
Std nTPM: 26.2
Median nTPM: 87.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 209.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 145.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 145.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 135.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 131.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 130.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 128.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 125.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 124.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 123.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.7
FF:10158-103A5 76 years, female 52.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.5
Pig sample Sample description nTPM
Midbrain
nTPM: 44.5
Samples: 4

Max nTPM: 52.7
Min nTPM: 35.1
Sample A Female 52.7
Sample B Female 35.1
Sample C Male 45.8
Sample D Male 44.3
Periaqueductal gray
nTPM: 35.4
Samples: 3

Max nTPM: 35.5
Min nTPM: 35.1
Sample B Female 35.5
Sample C Male 35.5
Sample D Male 35.1
Substantia nigra
nTPM: 34.2
Samples: 4

Max nTPM: 49.0
Min nTPM: 25.6
Sample A Female 49.0
Sample B Female 32.8
Sample C Male 25.6
Sample D Male 29.3
Superior colliculi
nTPM: 39.8
Samples: 4

Max nTPM: 54.1
Min nTPM: 30.2
Sample A Female 54.1
Sample B Female 36.7
Sample C Male 30.2
Sample D Male 38.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.1
Sample A Male 8.2
Sample B Male 6.9
Sample C Female 6.1
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71493026 Antisense, RP_050913_02_A06, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.